SCN Proteipedia

Hg_chrom6_TN10mRNA_12409

Organism: Heterodera glycines Gene Locus: chr6:6559314-6562103 Feature type: polypeptide

Protein Sequence

Length: 543

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.835	0.942	1.272	1.08	1.197	1.369	0.307	1.75	1.023	1.692	0.446	1.192	1.381	0.921	1.315	1.0	0.845	0.725	1.133	0.975	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11691	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.765

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRAR,PQAKRCK	52-83	0.932	—	—	—	—	0.000	—	—	0.270	0.144	0.020	0.698	0.121	0.324	0.242	0.165	0.122	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010714	1.000	1.000	Hsc_gene_24185.t1	Hsc_gene_24185.t1	—	Q2T9Q1.1 TBC1 domain family member 20 [Bos taurus]	KAI1706945.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005096\|GO:0016192\|GO:0043547	GO:0008150_0.964\|GO:0009987_0.911\|GO:0032501_0.819\|GO:0032502_0.795\|GO:0048856_0.795\|GO:0016043_0.770\|GO:0071840_0.770\|GO:0007275_0.758\|GO:0048731_0.748\|GO:0030154_0.742\|GO:0048869_0.742\|GO:0048468_0.730\|GO:0048513_0.717\|GO:0006996_0.714\|GO:0009653_0.705\|GO:0022414_0.704\|GO:0009888_0.696\|GO:0019953_0.692\|GO:0044085_0.692\|GO:0003006_0.689\|GO:0016050_0.689\|GO:0022607_0.689\|GO:0048646_0.687\|GO:0035295_0.685\|GO:0048609_0.684\|GO:0060429_0.684\|GO:0000902_0.683\|GO:0048608_0.683\|GO:0061458_0.683\|GO:0007276_0.681\|GO:0030855_0.680\|GO:0009887_0.679\|GO:0048232_0.679\|GO:0001654_0.677\|GO:0007281_0.677\|GO:0007283_0.677\|GO:0007423_0.677\|GO:0010256_0.677\|GO:0022412_0.677\|GO:0048880_0.677\|GO:0070925_0.677\|GO:0150063_0.677\|GO:0002064_0.676\|GO:0007548_0.676\|GO:0008406_0.674\|GO:0043010_0.674\|GO:0045137_0.674\|GO:0090596_0.674\|GO:0001675_0.670\|GO:0002088_0.670\|GO:0002089_0.670\|GO:0007030_0.670\|GO:0007286_0.670\|GO:0008584_0.670\|GO:0010927_0.670\|GO:0032989_0.670\|GO:0033363_0.670\|GO:0034389_0.670\|GO:0046546_0.670\|GO:0046661_0.670\|GO:0048515_0.670\|GO:0048592_0.670\|GO:0048593_0.670\|GO:0070306_0.670\|GO:0070307_0.670\|GO:0070309_0.670\|GO:0072520_0.670	IPR000195+86-379_89-356_196-375+\|IPR035969+78-266_299-412+\|IPR045913+37-426+	SM00164+86-379+	PF00566+196-375+Rab-GTPase-TBC_domain	—	PTHR20913+37-426+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-543	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.763	62710.130	4.976	-16.500	27.072	13.260	48.619	51.381	12.891	14.180	45.672

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1040.354	1588.143	973.872	750.830	760.100	788.221	1383.879	969.252	677.390	1338.143	1054.964

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.935	-1.218	-0.267	—	—	0.823	0.192	0.657	—	—	—	—	—

No JSON data available for plots.

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