Hg_chrom6_TN10mRNA_12413
Organism: Heterodera glycines Gene Locus: chr6:6568608-6569329 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 1.344 | 0.525 | 0.0 | 0.482 | 0.445 | 0.619 | 1.445 | 1.413 | 1.015 | 0.788 | 1.36 | 2.569 | 1.556 | 1.769 | 0.165 | 0.948 | 1.139 | 2.668 | 2.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11695
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
35-63
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.072
|
0.900
|
0.015
|
0.211
|
0.145
|
0.061
|
0.049
|
0.017
|
0.064
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010718
|
1.000
|
1.000
|
Hsc_gene_24191.t1
|
Hsc_gene_24191.t1
|
— |
Q22021.1 Putative ATP synthase subunit f, mitochondrial [Caenorhabditis elegans]
|
KJH44327.1 dTMP kinase [Dictyocaulus viviparus]
|
No
|
-0.690
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.871|GO:0110165_0.871|GO:0016020_0.827|GO:0005622_0.765|GO:0005737_0.765|GO:0043226_0.732|GO:0043227_0.728|GO:0043229_0.728|GO:0043231_0.728|GO:0005739_0.576
|
IPR019344+62-154+
|
— |
PF10206+62-154+Mitochondrial_F1F0-ATP_synthase,_subunit_f
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-173
|
9bpg_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
20930.460
|
10.486
|
16.500
|
22.543
|
23.699
|
36.994
|
63.006
|
16.763
|
5.780
|
41.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3697.591
|
644.543
|
2876.768
|
3913.646
|
5332.474
|
4749.509
|
2964.147
|
4859.962
|
3341.462
|
4167.971
|
3813.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.929
|
2.465
|
0.553
|
0.414
|
-0.152
|
-0.671
|
— |
-0.571
|
— | — | — | — | — |
No JSON data available for plots.