Hg_chrom6_TN10mRNA_12415
Organism: Heterodera glycines Gene Locus: chr6:6571609-6578403 Feature type: polypeptideProtein Sequence
Length: 925
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.332 | 1.031 | 0.708 | 1.118 | 0.937 | 1.331 | 0.644 | 1.622 | 0.384 | 0.891 | 0.655 | 1.081 | 0.991 | 1.705 | 1.677 | 1.869 | 0.727 | 0.541 | 0.249 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11697
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRRRR,ERKQRRG,RKQRRGALDLSKPKAK,KRRKTATEAAEKPRVRRL
|
44-64
|
1.000
|
31-70
|
0.998
|
— | — |
0.000
|
— | — |
0.941
|
0.128
|
0.056
|
0.226
|
0.038
|
0.008
|
0.018
|
0.183
|
0.043
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010720
|
1.000
|
1.000
|
Hsc_gene_24193.t1
|
Hsc_gene_24193.t1;Hsc_gene_24193.t2;Hsc_gene_24193.t3
|
— |
B7ZRU9.1 MDS1 and EVI1 complex locus protein EVI1-A [Xenopus laevis]
|
XP_032364509.1 histone-lysine N-methyltransferase MECOM isoform X12 [Etheostoma spectabile]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0065007_0.950|GO:0050789_0.946|GO:0009987_0.938|GO:0050794_0.938|GO:0008152_0.917|GO:0019222_0.917|GO:0031323_0.917|GO:0044237_0.917|GO:0044238_0.912|GO:0080090_0.912|GO:0009058_0.910|GO:0009059_0.910|GO:0010467_0.910|GO:0043170_0.910|GO:0044249_0.910|GO:0006139_0.908|GO:0016070_0.908|GO:0032774_0.908|GO:0034654_0.908|GO:0090304_0.908|GO:0141187_0.908|GO:0009889_0.902|GO:0031326_0.902|GO:0060255_0.901|GO:0010468_0.897|GO:0010556_0.897|GO:0019219_0.897|GO:0051252_0.897|GO:2001141_0.885|GO:0006351_0.883|GO:0006355_0.882|GO:0048519_0.833|GO:0005575_0.814|GO:0048523_0.814|GO:0003674_0.807|GO:0005488_0.807|GO:0003676_0.806|GO:0097159_0.806|GO:0110165_0.806|GO:0032501_0.773|GO:0005622_0.771|GO:0032502_0.770|GO:0048856_0.770|GO:0043226_0.768|GO:0043229_0.767|GO:0003677_0.765|GO:0016020_0.765|GO:0043565_0.759|GO:0007275_0.758|GO:0003690_0.750|GO:1990837_0.750|GO:0005634_0.731|GO:0043227_0.731|GO:0043231_0.731|GO:0000976_0.707|GO:0001067_0.707|GO:0009892_0.690|GO:0031324_0.690|GO:0009890_0.688|GO:0010558_0.688|GO:0010605_0.688|GO:0031327_0.688|GO:0045892_0.688|GO:0045934_0.688|GO:0051253_0.688|GO:1902679_0.688|GO:0140110_0.682|GO:0003700_0.662|GO:0006357_0.629|GO:0006366_0.629|GO:0016043_0.629|GO:0071840_0.629|GO:0048731_0.621|GO:0048518_0.620|GO:0048522_0.619|GO:0030154_0.603|GO:0048869_0.603|GO:0009893_0.598|GO:0010604_0.598|GO:0009891_0.593|GO:0031325_0.593|GO:0031328_0.593|GO:0045935_0.589|GO:0051254_0.589|GO:0010557_0.579|GO:0050896_0.570|GO:0045893_0.565|GO:1902680_0.565|GO:0050793_0.527|GO:0031974_0.522|GO:0031981_0.522|GO:0043233_0.522|GO:0070013_0.522|GO:0043228_0.512|GO:0043232_0.512
|
IPR013087+765-787_765-792_767-787_793-816_793-821_795-816_822-844_822-849_824-844+|IPR036236+761-811_801-847+
|
SM00355+765-787_793-816_822-844+
|
PF00096+765-787_793-816_822-844+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000112+760-789+Mds1_and_evi1_complex_locus_protein|G3DSA:3.30.160.60:FF:000159+815-846+Mds1_and_evi1_complex_locus_protein|G3DSA:3.30.160.60:FF:000929+790-814+Uncharacterized_protein,_isoform_B
|
PTHR24393+39-893+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-148;467-779;838-925
|
2.000
|
149-466;780-837
|
1mey_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
100040.610
|
9.203
|
43.000
|
25.297
|
8.108
|
52.432
|
47.568
|
15.784
|
9.514
|
58.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
greenyellow
|
1016.011
|
892.367
|
677.425
|
462.617
|
796.014
|
2604.061
|
1953.755
|
716.716
|
314.433
|
1170.617
|
803.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.627
|
-1.085
|
-0.441
|
0.751
|
1.724
|
-0.404
|
-1.968
|
1.591
|
— | — | — | — | — |
No JSON data available for plots.