Hg_chrom6_TN10mRNA_12416
Organism: Heterodera glycines Gene Locus: chr6:6584159-6585674 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.452 | 1.242 | 1.147 | 0.167 | 2.023 | 1.494 | 0.52 | 1.214 | 1.402 | 1.05 | 0.662 | 1.999 | 1.079 | 1.4 | 0.693 | 0.763 | 0.796 | 1.397 | 1.12 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11698
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.566
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.737
|
0.096
|
0.011
|
0.534
|
0.084
|
0.151
|
0.113
|
0.004
|
0.063
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010721
|
1.000
|
1.000
|
Hsc_gene_24194.t1
|
Hsc_gene_24194.t1
|
— |
Q17603.4 Probable histone chaperone asf-1-like protein [Caenorhabditis elegans]
|
KAI1706966.1 ASF1 like histone chaperone domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006325
|
GO:0008150_0.941|GO:0009987_0.807|GO:0005575_0.778|GO:0110165_0.766|GO:0005622_0.715|GO:0043226_0.638|GO:0016020_0.623|GO:0043229_0.615|GO:0003674_0.590|GO:0005488_0.555|GO:0043227_0.549|GO:0071840_0.548|GO:0065007_0.544|GO:0016043_0.543|GO:0008152_0.538|GO:0043231_0.533|GO:0044238_0.513|GO:0043170_0.512
|
IPR006818+3-155_3-190+|IPR036747+1-159_3-155+
|
— |
PF04729+3-155+ASF1_like_histone_chaperone
|
— |
PTHR12040+3-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-206
|
1.000
|
1-147
|
9imz_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
23550.490
|
4.134
|
-19.500
|
28.641
|
9.709
|
50.000
|
50.000
|
10.194
|
18.447
|
47.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
2273.973
|
1472.207
|
1388.005
|
1964.662
|
2369.558
|
1664.800
|
2383.584
|
1772.418
|
2346.589
|
3307.976
|
2895.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.316
|
0.279
|
0.611
|
0.238
|
-0.494
|
0.529
|
— |
0.571
|
— | — | — | — | — |
No JSON data available for plots.