Hg_chrom6_TN10mRNA_12417
Organism: Heterodera glycines Gene Locus: chr6:6585784-6590802 Feature type: polypeptideProtein Sequence
Length: 1,020
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 1.254 | 1.515 | 2.299 | 1.013 | 1.156 | 0.735 | 1.618 | 0.937 | 1.047 | 0.951 | 0.865 | 0.98 | 0.943 | 0.86 | 1.064 | 0.755 | 0.743 | 1.433 | 0.807 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11699
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole|golgi_apparatus
|
nucleus
|
RRNKRKV
|
— | — | — | — |
1-18
|
0.955
|
0.999
|
1.000
|
1.000
|
0.166
|
0.046
|
0.009
|
0.206
|
0.460
|
0.826
|
0.775
|
0.035
|
0.606
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010722
|
1.000
|
1.000
|
Hsc_gene_24195.t1
|
Hsc_gene_24195.t1
|
— |
P35951.2 Low-density lipoprotein receptor [Mus musculus]
|
KAF7637960.1 EGF-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.934|GO:0009987_0.854|GO:0005575_0.829|GO:0110165_0.815|GO:0003674_0.713|GO:0065007_0.696|GO:0050789_0.686|GO:0016020_0.684|GO:0032501_0.662|GO:0051179_0.649|GO:0005488_0.640|GO:0071944_0.638|GO:0050794_0.613|GO:0006810_0.611|GO:0051234_0.611|GO:0005886_0.607|GO:0050896_0.577|GO:0005622_0.571|GO:0032502_0.558|GO:0048856_0.558|GO:0016043_0.555|GO:0071840_0.555|GO:0005515_0.554|GO:0008152_0.539|GO:0043226_0.530|GO:0007275_0.518|GO:0016192_0.513|GO:0044238_0.509
|
IPR000033+523-566_585-627_605-645_605-647_628-671_648-690_648-692_672-715_742-784+|IPR000152+466-477+|IPR000742+39-76_193-230_452-487_455-497_811-862+|IPR001881+452-497+|IPR002172+38-75_39-76_39-77_40-75_81-140_81-141_115-136_115-139_116-139_144-185_144-186_144-187_145-185_161-182_193-229_193-230_193-231_197-229_205-226_233-270_233-271_233-272_238-270_246-267_280-316_280-317_280-318_281-316_292-313_320-356_320-357_320-358_321-356_332-353+|IPR011042+501-868+|IPR018097+452-475+|IPR023415+207-229_248-270_294-316_334-356+|IPR036055+35-77_39-85_78-142_114-139_143-186_143-192_193-231_197-229_232-273_236-270_278-317_279-318_319-356_319-361+|IPR049883+452-487+|IPR050685+38-152+
|
SM00135+523-566_585-627_628-671_672-715_742-784+|SM00179+452-497+|SM00181+39-76_193-230_455-497_811-862+|SM00192+39-77_81-141_144-187_193-231_233-272_280-318_320-358+
|
PF00057+38-75_116-139_144-185_193-229_233-270_280-316_320-356+Low-density_lipoprotein_receptor_domain_class_A|PF00058+605-645_648-690+Low-density_lipoprotein_receptor_repeat_class_B|PF07645+452-487+Calcium-binding_EGF_domain
|
G3DSA:2.10.25.10:FF:000009+411-498+Low-density_lipoprotein_receptor_isoform_1|G3DSA:2.120.10.30:FF:000241+494-735+Low-density_lipoprotein_receptor-related_protein_6|G3DSA:4.10.400.10:FF:000034+192-232+Low-density_lipoprotein_receptor-related_protein_2
|
PTHR24270+38-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
962-1020
|
1.000
|
1-961
|
6byv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
114511.590
|
5.201
|
-23.500
|
28.137
|
11.373
|
50.098
|
49.902
|
13.725
|
14.412
|
54.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
6589.985
|
14101.419
|
6758.067
|
3877.299
|
4776.586
|
5730.763
|
6368.690
|
8970.030
|
11231.894
|
1438.694
|
5635.780
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.289
|
-2.000
|
-0.694
|
0.269
|
0.277
|
0.163
|
0.547
|
-0.354
|
2.854
|
-1.358
|
— | — | — |