Hg_chrom6_TN10mRNA_12418
Organism: Heterodera glycines Gene Locus: chr6:6592464-6593612 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.113 | 0.957 | 0.495 | 1.356 | 1.104 | 0.627 | 0.478 | 1.489 | 0.841 | 0.797 | 1.97 | 1.728 | 1.288 | 0.781 | 0.82 | 0.863 | 1.232 | 1.472 | 1.126 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11700
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.804
|
0.270
|
0.015
|
0.309
|
0.137
|
0.069
|
0.041
|
0.029
|
0.111
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004244
|
2.000
|
1.000
|
Hsc_gene_24197.t1
|
Hsc_gene_24197.t1
|
— |
Q980A3.1 DNA-directed RNA polymerase subunit Rpo7 [Saccharolobus solfataricus P2]
|
KAI1722629.1 RNA polymerase III subunit rpc25 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006351|GO:0006352
|
GO:0005575_0.896|GO:0110165_0.730|GO:0008150_0.668|GO:0005622_0.660|GO:0016020_0.649|GO:0032991_0.617|GO:0009987_0.602|GO:0043226_0.599|GO:0043229_0.584|GO:0043227_0.573|GO:1902494_0.565|GO:0043231_0.553|GO:0005737_0.551|GO:0140535_0.551|GO:0061695_0.547|GO:1990234_0.547|GO:0000428_0.540|GO:0030880_0.540|GO:0008152_0.521
|
IPR005576+8-63+|IPR012340+79-185_80-196+|IPR013238+83-190+|IPR036898+1-77_1-79+|IPR045113+1-199+
|
— |
PF03876+8-63+SHS2_domain_found_in_N_terminus_of_Rpb7p/Rpc25p/MJ0397|PF08292+83-190+RNA_polymerase_III_subunit_Rpc25
|
G3DSA:3.30.1490.120:FF:000002+1-80+DNA-directed_RNA_polymerase_III_subunit_RPC8
|
PTHR12709+1-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-209
|
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
23778.150
|
4.511
|
-8.000
|
23.445
|
12.919
|
43.541
|
56.459
|
10.048
|
13.397
|
49.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1092.428
|
945.559
|
962.417
|
919.783
|
854.095
|
710.716
|
579.989
|
647.779
|
961.634
|
1950.521
|
1526.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.205
|
-0.177
|
— |
-0.139
|
-0.251
|
-0.284
|
— | — | — | — | — | — | — |
No JSON data available for plots.