Hg_chrom6_TN10mRNA_12419
Organism: Heterodera glycines Gene Locus: chr6:6593799-6596294 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.33 | 0.76 | 1.254 | 0.438 | 1.24 | 0.605 | 0.713 | 0.726 | 1.533 | 1.594 | 1.292 | 1.174 | 0.605 | 0.384 | 1.0 | 0.933 | 0.952 | 1.237 | 0.14 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11701
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.220
|
0.036
|
0.676
|
0.114
|
0.187
|
0.122
|
0.020
|
0.115
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010723
|
1.000
|
1.000
|
Hsc_gene_24198.t1
|
Hsc_gene_24198.t1
|
— |
P41988.2 T-complex protein 1 subunit alpha [Caenorhabditis elegans]
|
KAI1718640.1 TCP-1/cpn60 chaperonin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.888|GO:0110165_0.885|GO:0005622_0.846|GO:0005737_0.761|GO:0008150_0.588|GO:0005829_0.565|GO:0016020_0.561|GO:0043226_0.531|GO:0043229_0.526
|
IPR002194+37-49_58-74_86-94+|IPR002423+32-537+|IPR012715+10-542_13-539+|IPR017998+12-538_34-50_56-74_86-105_378-400_412-424+|IPR027409+211-383_216-374+|IPR027410+141-410_148-410+|IPR027413+14-536_29-536+|IPR053374+12-535+
|
— |
PF00118+32-537+TCP-1/cpn60_chaperonin_family
|
G3DSA:1.10.560.10:FF:000070+29-140+Uncharacterized_protein|G3DSA:3.50.7.10:FF:000009+216-374+T-complex_protein_1_subunit_alpha
|
PTHR11353+12-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
550-551
|
1.000
|
1-549
|
6nrd_I
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
59591.890
|
6.338
|
-1.000
|
29.220
|
4.719
|
47.187
|
52.813
|
14.882
|
14.338
|
51.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4256.508
|
3298.655
|
2953.812
|
6723.783
|
6860.830
|
4858.735
|
3576.766
|
3224.283
|
2978.224
|
4577.233
|
3891.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.388
|
0.890
|
1.295
|
— |
-0.482
|
-0.432
|
-0.697
|
0.293
|
— | — | — | — | — |
No JSON data available for plots.