Hg_chrom6_TN10mRNA_12420
Organism: Heterodera glycines Gene Locus: chr6:6596440-6597300 Feature type: polypeptideProtein Sequence
Length: 94
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 0.742 | 0.387 | 2.935 | 1.064 | 1.637 | 0.253 | 1.596 | 0.946 | 0.719 | 2.579 | 1.877 | 0.591 | 0.409 | 0.868 | 1.216 | 1.221 | 0.645 | 0.0 | 1.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11702
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.899
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVTNENKLLSSKQKFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.714
|
0.269
|
0.014
|
0.427
|
0.053
|
0.039
|
0.085
|
0.008
|
0.051
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1706416.1 microtubule-associated protein CRIPT domain-containing protein [Ditylenchus destructor]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0008150_0.929|GO:0110165_0.928|GO:0065007_0.911|GO:0050789_0.904|GO:0009987_0.893|GO:0050794_0.893|GO:0005622_0.858|GO:0003674_0.847|GO:0005488_0.847|GO:0043226_0.816|GO:0043229_0.800|GO:0016020_0.794|GO:0032501_0.794|GO:0005515_0.787|GO:0032502_0.762|GO:0048856_0.761|GO:0071840_0.748|GO:0016043_0.746|GO:0007275_0.732|GO:0048731_0.721|GO:0051179_0.719|GO:0032879_0.708|GO:0051641_0.705|GO:0065008_0.701|GO:0006996_0.699|GO:0033036_0.691|GO:0061024_0.691|GO:0070727_0.691|GO:0008104_0.689|GO:0044085_0.688|GO:0051128_0.687|GO:0007399_0.685|GO:0022607_0.684|GO:0060341_0.680|GO:0032880_0.678|GO:0033365_0.678|GO:0051668_0.676|GO:0007010_0.675|GO:0007017_0.675|GO:0033043_0.675|GO:0044087_0.675|GO:0072657_0.675|GO:0070925_0.674|GO:0000226_0.670|GO:0001941_0.670|GO:0007416_0.670|GO:0031122_0.670|GO:0034329_0.670|GO:0034330_0.670|GO:0035372_0.670|GO:0044380_0.670|GO:0050803_0.670|GO:0050807_0.670|GO:0050808_0.670|GO:0051963_0.670|GO:0072698_0.670|GO:0097106_0.670|GO:0097107_0.670|GO:0097119_0.670|GO:0097435_0.670|GO:0098698_0.670|GO:0099068_0.670|GO:0099084_0.670|GO:0099150_0.670|GO:0099151_0.670|GO:0099173_0.670|GO:0099175_0.670|GO:1901888_0.670|GO:1902115_0.670|GO:1902897_0.670|GO:1904861_0.670|GO:1904889_0.670|GO:1905475_0.670|GO:1905874_0.670|GO:0043228_0.660|GO:0043232_0.660|GO:0044877_0.657|GO:0008017_0.650|GO:0008092_0.650|GO:0015631_0.650|GO:0019904_0.650|GO:0030165_0.650|GO:0071944_0.623|GO:0005886_0.619|GO:0030054_0.568|GO:0045202_0.557|GO:0098590_0.557|GO:0042995_0.555|GO:0120025_0.555|GO:0043005_0.547|GO:0014069_0.540|GO:0030425_0.540|GO:0032279_0.540|GO:0036477_0.540|GO:0043025_0.540|GO:0043197_0.540|GO:0043198_0.540|GO:0044297_0.540|GO:0044309_0.540|GO:0097447_0.540|GO:0098794_0.540|GO:0098978_0.540|GO:0098984_0.540|GO:0099091_0.540|GO:0099092_0.540|GO:0099572_0.540
|
IPR019367+1-92_20-92+
|
— |
PF10235+20-92+Microtubule-associated_protein_CRIPT
|
— |
PTHR11805+1-92+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-94
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
10869.740
|
9.895
|
13.500
|
32.979
|
9.574
|
58.511
|
41.489
|
24.468
|
8.511
|
43.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
396.469
|
252.069
|
409.344
|
472.353
|
542.098
|
425.220
|
272.716
|
285.234
|
196.690
|
589.895
|
421.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.471
|
0.769
|
0.315
|
0.167
|
-0.336
|
-0.636
|
-0.680
|
— | — | — | — | — | — |
No JSON data available for plots.