Hg_chrom6_TN10mRNA_12422
Organism: Heterodera glycines Gene Locus: chr6:6600099-6602159 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 1.122 | 0.634 | 1.109 | 1.072 | 0.756 | 0.766 | 1.609 | 1.013 | 1.63 | 0.569 | 0.789 | 0.894 | 1.392 | 0.93 | 0.957 | 1.362 | 0.853 | 0.412 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11704
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.810
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.545
|
0.136
|
0.021
|
0.495
|
0.252
|
0.196
|
0.144
|
0.031
|
0.097
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010725
|
1.000
|
1.000
|
Hsc_gene_24200.t1
|
Hsc_gene_24200.t1
|
— |
Q6SKR2.1 Methyltransferase N6AMT1 [Mus musculus]
|
KAF7637936.1 MTS domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000045|GO:0003676|GO:0005737|GO:0008168|GO:0032259
|
GO:0008150_0.853|GO:0005575_0.791|GO:0110165_0.763|GO:0009987_0.717|GO:0008152_0.695|GO:0005622_0.676|GO:0044237_0.594|GO:0016020_0.571|GO:0005737_0.557|GO:0003674_0.528
|
IPR002052+144-150+|IPR007242+283-373+|IPR029063+12-203_16-243+|IPR029071+282-372+|IPR052190+11-239+
|
— |
PF04110+283-373+Ubiquitin-like_autophagy_protein_Apg12
|
G3DSA:3.40.50.150:FF:000077+15-242+HemK_methyltransferase_family_member_2
|
PTHR45875+11-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-296
|
2.000
|
1-247;297-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
40581.370
|
6.489
|
0.000
|
21.448
|
9.651
|
44.236
|
55.764
|
11.528
|
9.920
|
54.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
696.287
|
1017.709
|
836.212
|
470.822
|
483.371
|
398.187
|
911.773
|
839.466
|
546.249
|
777.491
|
678.388
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.513
|
-1.249
|
-0.720
|
— |
-0.266
|
1.206
|
0.973
|
0.262
|
— | — | — | — | — |
No JSON data available for plots.