Hg_chrom6_TN10mRNA_12423
Organism: Heterodera glycines Gene Locus: chr6:6602242-6605876 Feature type: polypeptideProtein Sequence
Length: 727
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.248 | 1.125 | 0.664 | 1.1 | 1.129 | 0.508 | 1.444 | 1.253 | 1.301 | 0.417 | 1.052 | 1.414 | 0.635 | 1.179 | 1.651 | 0.767 | 1.23 | 0.635 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.483
|
0.120
|
0.009
|
0.748
|
0.141
|
0.250
|
0.281
|
0.119
|
0.120
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010726
|
1.000
|
1.000
|
Hsc_gene_24201.t1
|
Hsc_gene_24201.t1
|
— |
Q96Q07.2 BTB/POZ domain-containing protein 9 [Homo sapiens]
|
XP_003142840.1 BTB/POZ domain-containing protein 9 [Loa loa];EFO21230.1 BTB/POZ domain-containing protein 9 [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.817|GO:0008150_0.809|GO:0110165_0.784|GO:0009987_0.712|GO:0065007_0.623|GO:0050789_0.601|GO:0005622_0.590|GO:0050794_0.569
|
IPR000210+55-160_62-129_62-162+|IPR008979+345-439_496-580+|IPR011333+31-190_44-190+|IPR011705+167-267_168-263+|IPR052407+31-635+
|
SM00225+62-162+|SM00875+167-267+
|
PF00651+55-160+BTB/POZ_domain|PF07707+168-263+BTB_And_C-terminal_Kelch
|
G3DSA:2.60.120.260:FF:000051+465-594+BTB/POZ_domain-containing_protein_9
|
PTHR46306+31-635+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
618-727
|
1.000
|
1-617
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
81525.650
|
4.908
|
-20.500
|
24.209
|
11.554
|
50.206
|
49.794
|
11.417
|
12.792
|
51.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
2362.644
|
1438.878
|
1871.986
|
1307.511
|
1337.726
|
1696.742
|
2965.260
|
2571.442
|
1423.460
|
4322.892
|
3080.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.150
|
-0.275
|
-0.409
|
— |
0.358
|
0.816
|
0.493
|
0.349
|
— | — | — | — | — |
No JSON data available for plots.