Hg_chrom6_TN10mRNA_12424
Organism: Heterodera glycines Gene Locus: chr6:6605966-6607342 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.551 | 0.612 | 1.148 | 0.726 | 0.965 | 0.81 | 1.754 | 0.789 | 0.819 | 0.64 | 0.478 | 2.477 | 1.023 | 1.215 | 1.933 | 1.053 | 0.863 | 1.196 | 0.405 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11706
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.890
|
0.167
|
0.038
|
0.568
|
0.110
|
0.031
|
0.061
|
0.012
|
0.055
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010727
|
1.000
|
1.000
|
Hsc_gene_24202.t1
|
Hsc_gene_24202.t1
|
— |
Q09250.1 Probable histone deacetylase complex subunit SAP18 [Caenorhabditis elegans]
|
KAH7707189.1 putative Sin3 associated polypeptide p18 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.744|GO:0005575_0.743|GO:0110165_0.740|GO:0005622_0.626|GO:0016020_0.618|GO:0043226_0.588|GO:0043229_0.585|GO:0003674_0.571|GO:0043227_0.546|GO:0043231_0.536|GO:0009987_0.533|GO:0005488_0.515|GO:0065007_0.504
|
IPR010516+15-138_18-134+|IPR042534+2-139+
|
— |
PF06487+18-134+Sin3_associated_polypeptide_p18_(SAP18)
|
G3DSA:3.10.20.550:FF:000001+2-139+Histone_deacetylase_complex_subunit_SAP18
|
PTHR13082+15-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
121-190
|
1.000
|
1-120
|
4a90_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
20575.170
|
7.699
|
2.500
|
26.316
|
8.421
|
44.737
|
55.263
|
14.211
|
12.105
|
57.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
846.591
|
655.931
|
680.402
|
1321.970
|
1359.588
|
951.060
|
775.843
|
639.178
|
549.132
|
897.999
|
748.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.176
|
0.874
|
1.067
|
— |
-0.501
|
-0.284
|
-0.678
|
0.421
|
— | — | — | — | — |
No JSON data available for plots.