Hg_chrom6_TN10mRNA_12426
Organism: Heterodera glycines Gene Locus: chr6:6610706-6612765 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 1.155 | 0.774 | 0.245 | 1.3 | 2.182 | 0.675 | 1.064 | 1.734 | 0.575 | 0.86 | 1.252 | 1.182 | 0.136 | 1.882 | 0.912 | 1.163 | 1.182 | 2.182 | 0.209 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11708
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— |
RKNFSIRRNATRRWRQ
|
1-21
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.189
|
0.487
|
0.141
|
0.587
|
0.043
|
0.117
|
0.205
|
0.032
|
0.178
|
0.764
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010728
|
1.000
|
1.000
|
Hsc_gene_24204.t1
|
Hsc_gene_24204.t1
|
— |
Q6FUJ0.1 Dynein light chain 1, cytoplasmic [Nakaseomyces glabratus CBS 138]
|
KAH7708969.1 Dynein light chain type 1 family protein [Aphelenchus avenae];KAH7716727.1 Dynein light chain type 1 family protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007017|GO:0030286
|
GO:0005575_0.907|GO:0110165_0.899|GO:0005622_0.843|GO:0043226_0.810|GO:0043229_0.782|GO:0008150_0.679|GO:0016020_0.640|GO:0009987_0.625|GO:0043228_0.617|GO:0043232_0.617|GO:0032991_0.614|GO:0005737_0.602|GO:0043227_0.574|GO:0005856_0.556|GO:0015630_0.550|GO:0003674_0.503
|
IPR001372+55-140_59-139_60-139+|IPR037177+57-139_57-140+
|
SM01375+55-140+
|
PF01221+60-139+Dynein_light_chain_type_1
|
G3DSA:3.30.740.10:FF:000005+55-140+Dynein_light_chain
|
PTHR11886+59-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-141
|
7k5b_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
16293.410
|
10.143
|
5.500
|
29.078
|
9.929
|
56.028
|
43.972
|
17.021
|
12.057
|
44.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
124.134
|
113.206
|
405.682
|
76.475
|
47.682
|
142.582
|
154.912
|
353.180
|
20.378
|
42.658
|
33.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.611
|
-0.703
|
-2.296
|
-0.710
|
1.591
|
— |
1.209
|
-1.047
|
— | — | — | — | — |
No JSON data available for plots.