Hg_chrom6_TN10mRNA_12427
Organism: Heterodera glycines Gene Locus: chr6:6613547-6615272 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.207 | 0.648 | 0.829 | 0.611 | 0.759 | 1.233 | 1.869 | 0.38 | 0.506 | 0.821 | 0.767 | 0.596 | 0.281 | 3.213 | 0.878 | 0.651 | 0.664 | 0.844 | 0.195 | 1.117 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11709
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKRR,LGPPGRDGVRGQKGPPGPKGESGPPGP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.040
|
0.070
|
0.013
|
0.141
|
0.388
|
0.163
|
0.356
|
0.005
|
0.628
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010729
|
1.000
|
1.000
|
Hsc_gene_24206.t1
|
Hsc_gene_24206.t1
|
— | — |
KAI1733324.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+6-58_11-57+|IPR008160+158-210_189-241_228-286+|IPR050632+12-297+
|
SM01088+6-58+
|
PF01391+158-210_189-241_228-286+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
100-395
|
1.000
|
1-99
|
9han_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
40164.130
|
7.538
|
2.500
|
19.241
|
5.823
|
35.443
|
64.557
|
10.127
|
9.114
|
66.076
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
487.214
|
583.608
|
317.992
|
79.543
|
358.699
|
2435.897
|
50.400
|
899.305
|
273.959
|
154.053
|
205.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.104
|
-3.012
|
-1.891
|
2.139
|
2.777
|
-5.583
|
-1.542
|
-4.014
|
— | — | — | — | — |
No JSON data available for plots.