Hg_chrom6_TN10mRNA_12428
Organism: Heterodera glycines Gene Locus: chr6:6615514-6620581 Feature type: polypeptideProtein Sequence
Length: 555
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 0.754 | 0.852 | 0.373 | 0.961 | 0.97 | 0.386 | 0.991 | 1.522 | 1.899 | 0.737 | 1.696 | 1.401 | 1.143 | 1.397 | 1.081 | 0.532 | 0.983 | 1.525 | 0.371 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11710
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
chloroplast
|
KRESARQKNDKKKVS
|
— | — |
5-55
|
0.973
|
1-33
|
0.929
|
0.869
|
1.000
|
1.000
|
0.057
|
0.087
|
0.017
|
0.201
|
0.879
|
0.296
|
0.430
|
0.123
|
0.391
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010730
|
1.000
|
1.000
|
Hsc_gene_24208.t1
|
Hsc_gene_24207.t1;Hsc_gene_24208.t1
|
— |
Q18081.3 Putative UDP-glucuronosyltransferase ugt-48 [Caenorhabditis elegans]
|
KAF7635965.1 UDPGT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.858|GO:0003674_0.723|GO:0009987_0.712|GO:0005575_0.676|GO:0110165_0.653|GO:0003824_0.617|GO:0016020_0.613|GO:0005622_0.578|GO:0016740_0.571|GO:0008152_0.555|GO:0016757_0.538|GO:0043226_0.537|GO:0043229_0.534|GO:0050896_0.533|GO:0005737_0.532|GO:0008194_0.528|GO:0005886_0.516|GO:0071944_0.516|GO:0043227_0.501
|
IPR002213+34-464_109-522+|IPR050271+47-518+
|
— |
PF00201+109-522+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+289-465+UDP-glucuronosyltransferase
|
PTHR48043+47-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
549-555
|
1.000
|
1-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
62849.690
|
9.116
|
12.500
|
24.144
|
10.270
|
41.982
|
58.018
|
13.694
|
10.450
|
44.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
107.246
|
40.344
|
154.567
|
66.424
|
272.114
|
182.870
|
82.766
|
120.542
|
21.812
|
107.980
|
71.051
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.710
|
0.583
|
-1.109
|
2.003
|
-0.559
|
-1.135
|
-0.713
|
— | — | — | — | — | — |