Hg_chrom6_TN10mRNA_12432
Organism: Heterodera glycines Gene Locus: chr6:6630313-6639944 Feature type: polypeptideProtein Sequence
Length: 1,794
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.869 | 0.791 | 0.769 | 1.421 | 1.529 | 0.803 | 1.171 | 0.855 | 0.859 | 0.929 | 1.016 | 0.79 | 1.147 | 1.695 | 1.64 | 1.161 | 0.6 | 0.557 | 0.361 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11714
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,KVKK,PKPS,RPRR,RRRR,RGTKRSK,RGRKRKS,RKLTALLERVIRRMDK,RKARDLEQLAIYRSRVR,KKEEEEKGGEERKRGTKR,KRSKTNSEVSSGAKRREE,RKRRGREEDGETEKQTKR,KKEEKQEKNIQEERRERN,KKRVNGERSVRDTKRERKV,KRVNGERSVRDTKRERKVK,KKRNSEEKHGEEDQTKKRV,KRNSEEKHGEEDQTKKRVT,RKQQLAHSAQQSPQKRGRG,KRGRGSVGKRKSGGKVAEKEQKEGKK
|
— | — |
111-131
|
0.998
|
— | — |
0.000
|
— | — |
0.909
|
0.088
|
0.087
|
0.299
|
0.051
|
0.018
|
0.040
|
0.038
|
0.066
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004418
|
1.000
|
2.000
|
Hsc_gene_24213.t1;Hsc_gene_24213.t2
|
Hsc_gene_24213.t1;Hsc_gene_24213.t2
|
— |
O44757.1 Probable histone-lysine N-methyltransferase lin-59 [Caenorhabditis elegans]
|
KAI1717400.1 SET domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003682
|
GO:0008150_0.974|GO:0009987_0.950|GO:0065007_0.866|GO:0050789_0.856|GO:0005575_0.829|GO:0110165_0.829|GO:0005622_0.790|GO:0050794_0.773|GO:0008152_0.704|GO:0043170_0.704|GO:0016020_0.696|GO:0009058_0.691|GO:0009059_0.691|GO:0010467_0.691|GO:0043226_0.691|GO:0044237_0.691|GO:0044249_0.691|GO:0043229_0.671|GO:0032502_0.665|GO:0048856_0.665|GO:0071840_0.644|GO:0016043_0.643|GO:0019222_0.639|GO:0031323_0.627|GO:0060255_0.620|GO:0006139_0.615|GO:0044238_0.615|GO:0090304_0.615|GO:0034654_0.611|GO:0141187_0.611|GO:0016070_0.610|GO:0032774_0.609|GO:0009889_0.601|GO:0010556_0.601|GO:0031326_0.601|GO:0043227_0.601|GO:0010468_0.599|GO:0032501_0.588|GO:0048518_0.583|GO:0006351_0.570|GO:0048522_0.567|GO:0003674_0.565|GO:0043231_0.563|GO:0005634_0.561|GO:0007275_0.550|GO:0080090_0.525|GO:0006366_0.520|GO:0043228_0.519|GO:0009893_0.517|GO:0010604_0.517|GO:0043232_0.515|GO:0031325_0.503
|
IPR001025+1456-1696_1576-1696_1594-1696+|IPR001965+1376-1420+|IPR011011+1367-1426+|IPR013083+1366-1434+|IPR043151+1584-1786+
|
SM00249+1376-1420+|SM00439+1456-1696+
|
PF01426+1594-1696+BAH_domain
|
— |
PTHR46147+1366-1469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-489;562-1181;1481-1589
|
3.000
|
490-561;1182-1480;1590-1794
|
8vlh_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
199009.670
|
8.741
|
49.000
|
29.654
|
7.135
|
57.915
|
42.085
|
16.778
|
12.876
|
52.007
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6196.100
|
24108.550
|
7381.577
|
3995.215
|
2042.319
|
3094.689
|
2254.718
|
4187.087
|
5246.569
|
5523.951
|
5405.073
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.937
|
-2.731
|
-0.777
|
-1.000
|
0.615
|
-0.448
|
— |
-0.753
|
— | — | — | — | — |
No JSON data available for plots.