Hg_chrom6_TN10mRNA_12434
Organism: Heterodera glycines Gene Locus: chr6:6662229-6665886 Feature type: polypeptideProtein Sequence
Length: 859
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.083 | 0.825 | 0.281 | 2.251 | 1.492 | 0.693 | 1.455 | 1.061 | 0.865 | 0.688 | 1.507 | 0.776 | 1.119 | 1.425 | 0.832 | 0.973 | 1.147 | 0.716 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11716
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.563
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
RRSTAHCFELLQRRELR,KRRWNREITDEKVEERWKR,RRWNREITDEKVEERWKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.392
|
0.163
|
0.013
|
0.650
|
0.201
|
0.201
|
0.113
|
0.013
|
0.550
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010733
|
1.000
|
1.000
|
Hsc_gene_24217.t1
|
Hsc_gene_24217.t1
|
— |
H2L045.2 Tensin homolog [Caenorhabditis elegans]
|
KAI6239940.1 Tensin-3 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.870|GO:0110165_0.870|GO:0008150_0.801|GO:0009987_0.683|GO:0005622_0.626|GO:0003674_0.538|GO:0030054_0.508|GO:0005488_0.506
|
IPR000980+569-667_571-661_571-676+|IPR006020+694-850+|IPR011993+684-855+|IPR013625+698-842+|IPR033929+696-843+|IPR035012+567-678+|IPR036860+565-685_567-673+|IPR051484+85-845+
|
SM00252+569-667+|SM00462+694-850+
|
PF00017+571-661+SH2_domain|PF08416+698-842+Phosphotyrosine-binding_domain
|
— |
PTHR45734+85-845+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-555;857-859
|
2.000
|
1-36;556-856
|
2kno_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
97276.340
|
4.652
|
-43.500
|
32.480
|
8.033
|
54.715
|
45.285
|
14.435
|
18.044
|
47.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1789.530
|
5391.809
|
2516.102
|
1380.229
|
707.883
|
890.481
|
1143.971
|
3776.637
|
1700.092
|
626.459
|
1086.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.329
|
-2.103
|
-0.758
|
-0.994
|
0.345
|
0.372
|
1.982
|
-1.581
|
— | — | — | — | — |
No JSON data available for plots.