Hg_chrom6_TN10mRNA_12438
Organism: Heterodera glycines Gene Locus: chr6:6691073-6693037 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.134 | 1.183 | 0.421 | 0.61 | 0.938 | 0.871 | 1.626 | 0.994 | 1.099 | 0.801 | 1.674 | 2.484 | 1.485 | 1.078 | 0.987 | 0.733 | 0.616 | 1.876 | 0.956 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11720
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.570
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
7-46
|
0.931
|
— | — |
0.000
|
— | — |
0.240
|
0.314
|
0.234
|
0.787
|
0.378
|
0.209
|
0.091
|
0.007
|
0.115
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004067
|
2.000
|
1.000
|
Hsc_gene_20062.t1
|
— | — |
P90682.2 Catalase [Ascaris suum]
|
KAH7727199.1 catalase B [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004096|GO:0006979|GO:0020037
|
GO:0008150_0.899|GO:0003674_0.805|GO:0009987_0.776|GO:0050896_0.725|GO:0005575_0.699|GO:0110165_0.693|GO:0003824_0.682|GO:0051716_0.642|GO:0042221_0.640|GO:0005622_0.574|GO:0016491_0.569|GO:0005737_0.556|GO:0070887_0.549|GO:0016020_0.536|GO:0009636_0.529|GO:0097237_0.525|GO:0098754_0.525|GO:0098869_0.525|GO:1990748_0.525|GO:0004096_0.509|GO:0004601_0.509|GO:0016209_0.509|GO:0016684_0.509
|
IPR011614+1-130_1-193_129-190+|IPR018028+1-246_129-231+|IPR020835+1-229+
|
SM01060+1-193+
|
PF00199+1-130_129-190+Catalase
|
— |
PTHR11465+129-231+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-246
|
1dgh_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
28185.070
|
7.869
|
5.000
|
23.984
|
17.886
|
43.902
|
56.098
|
13.821
|
10.163
|
48.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
147.126
|
15.509
|
6.254
|
2.291
|
2.478
|
2.928
|
15.838
|
9.581
|
4.997
|
619.349
|
356.055
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.530
|
-2.892
|
-1.343
|
— | — |
2.453
|
— | — |
-7.097
|
— |
-7.685
|
— | — |
No JSON data available for plots.