Hg_chrom6_TN10mRNA_12439
Organism: Heterodera glycines Gene Locus: chr6:6693286-6695786 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.34 | 0.75 | 0.67 | 0.318 | 1.152 | 0.473 | 1.207 | 1.613 | 0.614 | 1.993 | 0.489 | 1.084 | 0.768 | 1.063 | 1.317 | 0.724 | 1.058 | 1.187 | 0.709 | 0.271 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
40-63
|
0.969
|
22-56
|
0.994
|
— | — |
0.000
|
— | — |
0.488
|
0.172
|
0.087
|
0.611
|
0.096
|
0.481
|
0.258
|
0.204
|
0.183
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010737
|
1.000
|
1.000
|
Hsc_gene_24224.t1
|
Hsc_gene_24224.t1
|
— |
P9WHK0.1 Putative phosphoribosyl transferase MT0597 [Mycobacterium tuberculosis CDC1551]
|
HEV7275192.1 dienelactone hydrolase family protein [Devosiaceae bacterium]
|
MCW5798790
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.865|GO:0110165_0.864|GO:0005622_0.779|GO:0005737_0.766|GO:0071944_0.697|GO:0005829_0.612|GO:0030312_0.585|GO:0005618_0.581|GO:0009274_0.581
|
IPR029058+7-216_21-215+|IPR050261+27-210+
|
— | — | — |
PTHR22946+27-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-217
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
23099.580
|
6.842
|
1.500
|
23.502
|
7.834
|
40.092
|
59.908
|
12.903
|
10.599
|
54.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
597.474
|
1764.729
|
593.099
|
474.646
|
488.262
|
417.969
|
713.997
|
347.627
|
557.671
|
395.571
|
465.043
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.803
|
-2.032
|
-0.213
|
— |
-0.210
|
0.783
|
-0.368
|
1.181
|
— | — | — | — | — |
No JSON data available for plots.