Hg_chrom6_TN10mRNA_12441
Organism: Heterodera glycines Gene Locus: chr6:6699970-6701481 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.621 | 0.828 | 0.917 | 0.921 | 0.791 | 1.446 | 0.742 | 1.484 | 0.989 | 1.363 | 0.854 | 1.396 | 1.731 | 0.742 | 1.211 | 1.272 | 0.632 | 0.809 | 1.598 | 1.484 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11723
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRR
|
39-61
|
0.997
|
17-52
|
0.974
|
— | — |
0.000
|
— | — |
0.690
|
0.313
|
0.009
|
0.669
|
0.101
|
0.111
|
0.054
|
0.004
|
0.145
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010739
|
1.000
|
1.000
|
Hsc_gene_24227.t1
|
Hsc_gene_24227.t1;Hsc_gene_6166.t1
|
— |
Q9D2E1.1 Testis-specific serine/threonine-protein kinase 3 [Mus musculus]
|
KAF7632795.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.949|GO:0003674_0.771|GO:0003824_0.771|GO:0016740_0.771|GO:0140096_0.753|GO:0009987_0.751|GO:0016772_0.745|GO:0016301_0.736|GO:0016773_0.732|GO:0004672_0.729|GO:0005575_0.674|GO:0110165_0.669|GO:0005622_0.627|GO:0004674_0.587|GO:0008152_0.567|GO:0044237_0.560|GO:0043170_0.554|GO:0044238_0.551|GO:0065007_0.547|GO:0050896_0.538|GO:0005737_0.535|GO:0043412_0.535|GO:0019538_0.531|GO:0036211_0.531|GO:0006793_0.514|GO:0006796_0.514|GO:0050789_0.514|GO:0005488_0.505
|
IPR000719+59-312_62-312+|IPR008271+178-190+|IPR011009+55-315+|IPR017441+65-88+
|
SM00220+59-312+
|
PF00069+62-312+Protein_kinase_domain
|
— |
PTHR24346+58-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
337-337
|
1.000
|
1-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
38916.490
|
8.526
|
11.000
|
24.332
|
16.320
|
46.291
|
53.709
|
14.540
|
9.792
|
44.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1018.476
|
57.051
|
166.272
|
161.839
|
356.196
|
2685.684
|
763.316
|
2558.460
|
7.584
|
1919.336
|
1100.014
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.310
|
1.367
|
— |
1.107
|
2.929
|
-1.804
|
— |
-1.597
|
-8.126
|
4.642
|
— | — |
7.207
|
No JSON data available for plots.