SCN Proteipedia

Hg_chrom6_TN10mRNA_12443

Organism: Heterodera glycines Gene Locus: chr6:6708168-6716191 Feature type: polypeptide

Protein Sequence

Length: 1,404

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.01	0.911	0.945	0.368	1.128	1.297	0.856	1.353	0.807	1.251	0.507	0.754	0.692	1.356	1.497	1.241	1.098	0.907	1.096	0.649	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11725	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.884

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RREEEEHELGRELRR,RHERSRSAPAGSPKTASGKKGRLFRKGKK	—	—	—	—	—	—	0.000	—	—	0.348	0.194	0.012	0.653	0.162	0.156	0.144	0.021	0.522	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004419	1.000	2.000	Hsc_gene_24228.t1;Hsc_gene_24228.t2	Hsc_gene_24228.t1;Hsc_gene_24228.t2	—	Q9U308.2 Juxtamembrane domain-associated catenin [Caenorhabditis elegans]	KAI1714493.1 fibronectin type III domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0098609	GO:0008150_0.938\|GO:0005575_0.907\|GO:0110165_0.907\|GO:0009987_0.879\|GO:0065007_0.689\|GO:0050789_0.655\|GO:0003674_0.654\|GO:0016020_0.619\|GO:0043226_0.617\|GO:0050794_0.613\|GO:0005622_0.609\|GO:0005488_0.554\|GO:0071840_0.534\|GO:0016043_0.531\|GO:0043229_0.519\|GO:0032502_0.518\|GO:0048856_0.518\|GO:0005515_0.501	IPR000225+779-820_784-819_791-835_823-866_825-866_835-879_941-988_1082-1123_1129-1169_1132-1168_1140-1177+\|IPR003961+197-281_197-285_199-285_199-295_301-416_302-427_303-432_445-562_597-692_598-679_598-689_607-685+\|IPR011989+750-1290+\|IPR013783+197-296_297-433_587-693+\|IPR016024+750-1277+\|IPR028435+19-1295+\|IPR036116+196-329_301-429_592-691+	SM00060+197-281_301-416_445-562_598-679+\|SM00185+779-820_823-866_941-988_1082-1123_1129-1169+	PF00041+199-285_607-685+Fibronectin_type_III_domain\|PF00514+784-819_825-866_1132-1168+Armadillo/beta-catenin-like_repeat	—	PTHR10372+19-1295+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-202;286-405;703-749;995-1097;1283-1404	4.000	203-285;406-702;750-994;1098-1282	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.762	154208.570	6.555	1.000	25.356	8.832	49.715	50.285	13.390	11.966	54.487

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	3045.430	10874.110	2991.183	2056.799	1459.772	3548.053	3567.283	3999.132	1242.633	1705.657	1507.218

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.090	-2.540	-0.432	-0.526	1.296	—	—	—	—	—	—	—	—

No JSON data available for plots.

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