Hg_chrom6_TN10mRNA_12449
Organism: Heterodera glycines Gene Locus: chr6:6733858-6734450 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.444 | 0.578 | 0.339 | 1.285 | 0.104 | 0.478 | 0.961 | 0.621 | 1.104 | 2.182 | 0.753 | 1.461 | 2.415 | 0.717 | 0.507 | 1.863 | 0.407 | 1.035 | 0.478 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11731
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|golgi_apparatus
|
— |
KKRK,KRYGTDLPSAAAVGGGKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.155
|
0.036
|
0.230
|
0.770
|
0.408
|
0.785
|
0.007
|
0.091
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010744
|
1.000
|
1.000
|
Hsc_gene_24234.t1
|
Hsc_gene_24234.t1
|
— | — |
KAI1724816.1 keratinocyte-associated protein 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.932|GO:0016020_0.597|GO:0071944_0.534|GO:0005886_0.526
|
IPR018614+34-161_35-150+
|
— |
PF09775+35-150+Keratinocyte-associated_protein_2
|
— |
PTHR32001+34-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
16891.160
|
9.765
|
9.000
|
11.180
|
11.801
|
31.056
|
68.944
|
8.696
|
2.484
|
54.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
444.113
|
287.464
|
432.166
|
469.617
|
613.155
|
559.892
|
849.016
|
471.839
|
361.633
|
290.586
|
321.035
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.357
|
0.571
|
0.230
|
0.352
|
— |
0.610
|
-0.353
|
0.990
|
— | — | — | — | — |
No JSON data available for plots.