Hg_chrom6_TN10mRNA_12450
Organism: Heterodera glycines Gene Locus: chr6:6734679-6736098 Feature type: polypeptideProtein Sequence
Length: 242
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.441 | 0.601 | 2.137 | 0.826 | 0.954 | 0.836 | 1.033 | 1.01 | 1.452 | 0.563 | 0.243 | 2.296 | 1.033 | 1.181 | 0.826 | 0.474 | 1.064 | 1.589 | 0.486 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11732
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.804
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
nucleus
|
RKNCSTNELTLHRTKCRAK
|
— | — | — | — |
1-21
|
0.998
|
0.999
|
1.000
|
1.000
|
0.059
|
0.137
|
0.043
|
0.105
|
0.633
|
0.831
|
0.673
|
0.128
|
0.751
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010745
|
1.000
|
1.000
|
Hsc_gene_24235.t1
|
Hsc_gene_24235.t1
|
— |
Q95QZ5.1 TM2 domain-containing protein C41D11.9 [Caenorhabditis elegans]
|
KAI1724815.1 TM2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0009987_0.890|GO:0065007_0.860|GO:0050789_0.842|GO:0023052_0.761|GO:0007154_0.754|GO:0050794_0.614|GO:0050896_0.614|GO:0051716_0.568|GO:0007165_0.540|GO:0032502_0.510
|
IPR007829+179-226+|IPR050932+53-242+
|
— |
PF05154+179-226+TM2_domain
|
— |
PTHR21016+53-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
27037.280
|
7.809
|
5.500
|
19.835
|
14.050
|
38.430
|
61.570
|
11.570
|
8.264
|
52.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
358.662
|
409.651
|
442.500
|
370.582
|
410.108
|
354.606
|
716.326
|
373.288
|
177.447
|
282.163
|
237.285
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.281
|
-0.146
|
— | — |
1.026
|
— |
1.084
|
— | — | — | — | — |