Hg_chrom6_TN10mRNA_12452
Organism: Heterodera glycines Gene Locus: chr6:6737042-6741643 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 1.048 | 0.778 | 0.544 | 1.014 | 0.751 | 0.59 | 1.126 | 1.301 | 1.278 | 0.512 | 0.927 | 1.126 | 1.256 | 1.885 | 1.126 | 0.702 | 1.502 | 1.04 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11733
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.897
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
9-29
|
0.971
|
6-28
|
0.998
|
— | — |
0.000
|
— | — |
0.049
|
0.058
|
0.018
|
0.117
|
0.196
|
0.099
|
0.237
|
0.051
|
0.776
|
0.405
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001367
|
3.000
|
2.000
|
Hsc_gene_24236.t3;Hsc_gene_24236.t4
|
Hsc_gene_24236.t3
|
— |
D3YXG0.1 Hemicentin-1 [Mus musculus]
|
KAI1717962.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.859|GO:0008150_0.770|GO:0071944_0.726|GO:0016020_0.679|GO:0009987_0.649|GO:0005886_0.582
|
IPR003598+85-165_192-261_294-361+|IPR003599+79-177_186-273_280-372+|IPR007110+72-161_178-267_276-370+|IPR013098+294-369+|IPR013106+81-167+|IPR013783+68-182_183-270_271-384+|IPR036179+71-164_177-278_294-370+|IPR051170+76-373+
|
SM00408+85-165_192-261_294-361+|SM00409+79-177_186-273_280-372+
|
PF07679+294-369+Immunoglobulin_I-set_domain|PF07686+81-167+Immunoglobulin_V-set_domain|PF13927+177-258+Immunoglobulin_domain
|
G3DSA:2.60.40.10:FF:000328+181-273+CLUMA_CG000981,_isoform_A
|
PTHR12231+76-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
6onb_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
49888.450
|
9.484
|
15.000
|
25.225
|
9.910
|
44.820
|
55.180
|
14.865
|
10.360
|
51.577
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
405.644
|
1099.830
|
512.722
|
230.084
|
83.832
|
114.750
|
121.937
|
1092.087
|
38.699
|
524.953
|
316.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.329
|
-2.394
|
-1.048
|
-1.490
|
0.469
|
— |
3.148
|
-3.021
|
-3.865
|
— | — | — | — |
No JSON data available for plots.