Hg_chrom6_TN10mRNA_12454
Organism: Heterodera glycines Gene Locus: chr6:6741797-6745564 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 0.886 | 0.924 | 0.688 | 1.119 | 0.745 | 0.821 | 1.906 | 0.887 | 1.324 | 0.495 | 1.815 | 1.764 | 1.396 | 1.333 | 1.089 | 0.833 | 0.632 | 1.117 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|golgi_apparatus
|
— | — |
25-51
|
0.998
|
70-90
|
1.000
|
— | — |
0.000
|
— | — |
0.123
|
0.049
|
0.012
|
0.204
|
0.569
|
0.352
|
0.709
|
0.145
|
0.600
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010746
|
1.000
|
1.000
|
Hsc_gene_24237.t1
|
Hsc_gene_24237.t1
|
— |
Q9HAR2.2 Adhesion G protein-coupled receptor L3 [Homo sapiens]
|
KAI1731574.1 olfactomedin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.865|GO:0009987_0.774|GO:0005575_0.753|GO:0110165_0.753|GO:0065007_0.633|GO:0050789_0.589|GO:0050794_0.562|GO:0016020_0.551|GO:0071944_0.543
|
IPR003112+294-547_295-547_298-542+|IPR008160+136-180+|IPR050605+266-545+
|
SM00284+295-547+
|
PF01391+136-180+Collagen_triple_helix_repeat_(20_copies)|PF02191+298-542+Olfactomedin-like_domain
|
— |
PTHR23192+266-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-245
|
2.000
|
1-122;246-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
62430.870
|
6.463
|
-0.500
|
25.408
|
15.064
|
44.828
|
55.172
|
13.612
|
11.797
|
48.639
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
228.492
|
311.318
|
650.846
|
162.091
|
127.068
|
153.498
|
74.118
|
513.917
|
237.823
|
73.963
|
144.189
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
-1.079
|
-1.897
|
-0.384
|
0.287
|
-1.040
|
1.641
|
-2.652
|
— | — | — | — | — |
No JSON data available for plots.