Hg_chrom6_TN10mRNA_12455
Organism: Heterodera glycines Gene Locus: chr6:6746494-6755511 Feature type: polypeptideProtein Sequence
Length: 675
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 0.758 | 0.673 | 1.328 | 1.407 | 1.406 | 0.741 | 1.926 | 0.691 | 1.522 | 0.516 | 0.959 | 1.152 | 0.94 | 1.935 | 1.354 | 0.704 | 0.561 | 0.228 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11735
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RTAKRRN
|
8-28
|
0.999
|
29-50
|
0.986
|
— | — |
0.025
|
— | — |
0.158
|
0.028
|
0.015
|
0.272
|
0.272
|
0.421
|
0.335
|
0.180
|
0.675
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010747
|
1.000
|
1.000
|
Hsc_gene_24238.t1
|
Hsc_gene_24238.t1;Hsc_gene_4750.t1
|
— |
Q9XU98.2 Protein eva-1 [Caenorhabditis elegans]
|
KAI1731582.1 galactose binding lectin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.759|GO:0110165_0.755|GO:0008150_0.639|GO:0065007_0.570|GO:0009987_0.559|GO:0016020_0.559|GO:0050789_0.559|GO:0050794_0.552
|
IPR000922+112-226_120-225_235-342_243-341+|IPR043159+102-230_231-349+
|
— |
PF02140+120-225_243-341+Galactose_binding_lectin_domain
|
— |
PTHR46780+233-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
363-493;674-675
|
2.000
|
1-362;494-673
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
75940.870
|
7.897
|
18.000
|
28.889
|
10.222
|
51.407
|
48.593
|
16.741
|
12.148
|
46.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
909.330
|
4075.994
|
879.593
|
663.251
|
466.192
|
408.381
|
318.686
|
490.268
|
436.824
|
912.315
|
708.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.443
|
-2.757
|
-0.298
|
-0.542
|
— |
-0.348
|
— |
-0.481
|
— | — | — | — | — |
No JSON data available for plots.