Hg_chrom6_TN10mRNA_12456
Organism: Heterodera glycines Gene Locus: chr6:6755957-6765025 Feature type: polypeptideProtein Sequence
Length: 1,413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.889 | 0.862 | 0.268 | 1.026 | 1.307 | 0.826 | 1.557 | 0.582 | 1.014 | 0.676 | 1.249 | 1.022 | 1.524 | 1.372 | 2.032 | 0.859 | 0.804 | 0.599 | 0.312 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11736
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKPKKK,KRANTAAVEAEAQLRKRFF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.292
|
0.161
|
0.037
|
0.715
|
0.145
|
0.163
|
0.135
|
0.072
|
0.299
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010748
|
1.000
|
1.000
|
Hsc_gene_24239.t1
|
Hsc_gene_24239.t1
|
— | — |
KAF7639115.1 Serine_rich domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR014928+928-1043+|IPR021901+1262-1404+|IPR038319+880-1048+
|
— |
PF08824+928-1043+Serine_rich_protein_interaction_domain|PF12026+1262-1404+Crk-Associated_Substrate_C-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-891;1062-1274
|
2.000
|
892-1061;1275-1413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
153332.460
|
8.202
|
26.000
|
25.195
|
8.634
|
53.574
|
46.426
|
14.296
|
10.899
|
56.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1606.748
|
4892.463
|
1682.059
|
1506.289
|
2025.258
|
2863.132
|
1957.151
|
1687.941
|
57.626
|
755.945
|
456.666
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.770
|
-1.837
|
— |
0.395
|
0.514
|
-0.539
|
-0.866
|
0.356
|
-3.859
|
4.894
|
— | — | — |
No JSON data available for plots.