Hg_chrom6_TN10mRNA_12458
Organism: Heterodera glycines Gene Locus: chr6:6772590-6783488 Feature type: polypeptideProtein Sequence
Length: 1,468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 1.267 | 0.991 | 0.517 | 1.192 | 1.572 | 0.633 | 2.146 | 0.848 | 1.04 | 0.826 | 1.483 | 0.549 | 0.891 | 1.529 | 1.44 | 1.061 | 0.702 | 0.629 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11737
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRSLAVPPVSERRKFF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.133
|
0.016
|
0.723
|
0.103
|
0.246
|
0.232
|
0.088
|
0.426
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002338
|
2.000
|
2.000
|
Hsc_gene_24240.t1;Hsc_gene_24240.t2
|
Hsc_gene_24240.t1;Hsc_gene_24240.t2
|
— |
Q6WCQ1.3 Myosin phosphatase Rho-interacting protein [Homo sapiens]
|
CRZ26112.1 Bm3289, partial [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.936|GO:0005622_0.886|GO:0043226_0.831|GO:0043229_0.815|GO:0008150_0.773|GO:0009987_0.734|GO:0043228_0.723|GO:0043232_0.723|GO:0065007_0.720|GO:0050789_0.712|GO:0050794_0.700|GO:0005856_0.636|GO:0048518_0.613|GO:0048522_0.605|GO:0015629_0.552|GO:0003674_0.542|GO:0005488_0.537
|
IPR001849+5-146_24-139_359-456_360-458_362-454+|IPR011993+1-142_352-461+|IPR052223+781-1223+
|
SM00233+5-146_360-458+
|
PF00169+24-139_362-454+PH_domain
|
— |
PTHR17271+781-1223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-350;451-894;973-1408
|
4.000
|
1-191;351-450;895-972;1409-1468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
163920.600
|
8.042
|
36.500
|
29.837
|
8.447
|
57.970
|
42.030
|
17.234
|
12.602
|
51.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6162.087
|
8076.742
|
5076.833
|
3525.537
|
5162.703
|
10711.028
|
4625.232
|
5611.975
|
5894.052
|
6492.321
|
6235.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.899
|
-1.333
|
-0.417
|
0.518
|
1.068
|
-1.202
|
-1.034
|
— | — | — | — | — | — |
No JSON data available for plots.