SCN Proteipedia

Hg_chrom6_TN10mRNA_12460

Organism: Heterodera glycines Gene Locus: chr6:6786689-6792602 Feature type: polypeptide

Protein Sequence

Length: 1,162

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.271	1.261	1.142	0.89	0.875	1.103	0.676	2.022	1.3	1.942	0.704	0.861	0.717	0.695	0.984	0.848	0.79	0.821	0.596	0.354	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11739	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|lysosome_vacuole	—	RLLKRKS	—	—	—	—	—	—	0.000	—	—	0.393	0.091	0.015	0.608	0.214	0.701	0.367	0.007	0.313	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010750	1.000	1.000	Hsc_gene_24242.t1	Hsc_gene_24242.t1	—	Q9P2R3.2 Rabankyrin-5 [Homo sapiens]	KAI1731590.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0046872	GO:0005575_0.890\|GO:0110165_0.882\|GO:0005622_0.785\|GO:0016020_0.746\|GO:0008150_0.719\|GO:0071944_0.701\|GO:0005737_0.690\|GO:0005886_0.676\|GO:0003674_0.675\|GO:0009987_0.666\|GO:0043226_0.654\|GO:0043229_0.630\|GO:0043227_0.588\|GO:0043231_0.564\|GO:0005488_0.538\|GO:0065007_0.519	IPR000210+68-165_76-136_76-168+\|IPR000306+1088-1154_1096-1152+\|IPR002110+251-323_262-291_262-294_295-324_295-327_353-423_362-393_397-428_433-462_466-516_502-585_521-549_555-584_555-587_621-650_621-653_645-722_655-684_693-722_756-786_761-846_790-820_825-854_859-888_894-923_894-926_899-988_927-956_927-959_960-982_960-990_1032-1064+\|IPR011011+1093-1153+\|IPR011333+47-198_54-165+\|IPR013083+1088-1154+\|IPR017455+1093-1153+\|IPR036770+206-352_252-532_353-478_497-616_546-834_617-683_684-846_755-1073_847-963_964-1087+\|IPR049764+1090-1152+	SM00064+1088-1154+\|SM00225+76-168+\|SM00248+262-291_295-324_362-393_397-428_433-462_466-516_521-549_555-584_621-650_655-684_693-722_756-786_790-820_825-854_859-888_894-923_927-956_960-990_1032-1064+	PF00651+68-165+BTB/POZ_domain\|PF01363+1096-1152+FYVE_zinc_finger\|PF12796+251-323_353-423_502-585_645-722_761-846_899-988+Ankyrin_repeats_(3_copies)	G3DSA:3.30.40.10:FF:000104+1089-1154+Ankyrin_repeat_and_FYVE_domain-containing_1	PTHR24178+255-414+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1162	1dvp_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.499	127083.680	6.484	-0.500	25.043	8.606	45.525	54.475	13.511	11.532	50.688

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1632.917	4834.743	2022.799	1330.858	1380.393	1426.257	3115.558	1121.976	1013.026	672.021	818.166

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.487	-1.998	-0.495	—	—	1.137	-0.452	1.615	—	—	—	—	—

No JSON data available for plots.

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