Hg_chrom6_TN10mRNA_12461
Organism: Heterodera glycines Gene Locus: chr6:6793409-6794542 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 1.045 | 0.817 | 0.775 | 1.498 | 1.152 | 0.669 | 1.685 | 1.998 | 0.607 | 1.702 | 1.983 | 1.873 | 0.216 | 0.459 | 0.321 | 0.921 | 0.681 | 0.864 | 1.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11740
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.770
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.292
|
0.068
|
0.708
|
0.218
|
0.325
|
0.406
|
0.049
|
0.127
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004343
|
2.000
|
1.000
|
Hsc_gene_24243.t1
|
Hsc_gene_24243.t1
|
T26A5.9
|
Q24117.1 Dynein light chain 1, cytoplasmic [Drosophila melanogaster]
|
KAI1717946.1 dynein light chain type 1 domain-containing protein [Ditylenchus destructor];KAI1731591.1 dynein light chain type 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005875|GO:0007017|GO:0030286
|
GO:0005575_0.930|GO:0110165_0.930|GO:0005622_0.821|GO:0043226_0.784|GO:0043229_0.766|GO:0008150_0.691|GO:0016020_0.655|GO:0009987_0.624|GO:0005737_0.609|GO:0032991_0.608|GO:0043228_0.577|GO:0043232_0.577|GO:0043227_0.550|GO:0005856_0.527|GO:0015630_0.527|GO:0003674_0.505
|
IPR001372+1-88_5-88_5-89+|IPR019763+55-69+|IPR037177+1-89_4-89+
|
SM01375+1-88+
|
PF01221+5-88+Dynein_light_chain_type_1
|
G3DSA:3.30.740.10:FF:000001+1-89+Dynein_light_chain
|
PTHR11886+5-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
3dvt_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
10355.910
|
7.241
|
1.500
|
30.337
|
16.854
|
47.191
|
52.809
|
16.854
|
13.483
|
39.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2245.528
|
1564.538
|
2025.591
|
2287.914
|
2680.836
|
2356.716
|
1851.935
|
3237.006
|
1604.723
|
2618.942
|
2184.276
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.143
|
0.411
|
0.285
|
0.196
|
-0.171
|
-0.337
|
0.356
|
-0.663
|
— | — | — | — | — |
No JSON data available for plots.