Hg_chrom6_TN10mRNA_12462
Organism: Heterodera glycines Gene Locus: chr6:6795899-6798732 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 0.944 | 0.911 | 0.494 | 1.591 | 1.469 | 0.54 | 0.716 | 0.743 | 1.064 | 0.832 | 1.123 | 1.127 | 1.331 | 1.461 | 1.568 | 0.861 | 0.615 | 0.734 | 0.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11741
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RRKR
|
4-26
|
0.982
|
15-47
|
0.999
|
— | — |
0.000
|
— | — |
0.760
|
0.130
|
0.011
|
0.252
|
0.028
|
0.054
|
0.076
|
0.007
|
0.070
|
0.283
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002339
|
2.000
|
2.000
|
Hsc_gene_26738.t1;Hsc_gene_26738.t2
|
— | — | — |
KAF7639138.1 MADF domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006578+54-151_55-146+
|
SM00595+54-151+
|
PF10545+55-146+Alcohol_dehydrogenase_transcription_factor_Myb/SANT-like
|
— |
PTHR21505+47-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
153-377
|
2.000
|
1-152;378-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
46913.290
|
5.417
|
-5.000
|
28.640
|
8.353
|
54.654
|
45.346
|
14.081
|
14.558
|
50.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1031.894
|
2117.071
|
1297.368
|
1000.672
|
536.655
|
644.790
|
520.184
|
822.307
|
896.183
|
1240.258
|
1092.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.937
|
-1.218
|
-0.265
|
-0.930
|
0.279
|
-0.300
|
— |
-0.519
|
— | — | — | — | — |
No JSON data available for plots.