Hg_chrom6_TN10mRNA_12469
Organism: Heterodera glycines Gene Locus: chr6:6820385-6821105 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.273 | 1.041 | 0.633 | 0.858 | 0.829 | 1.403 | 0.652 | 1.244 | 1.769 | 0.538 | 0.226 | 1.463 | 1.106 | 0.67 | 2.538 | 0.853 | 1.06 | 1.206 | 0.765 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11747
|
— | — |
0.444
|
1.000
|
— |
1.000
|
— | — |
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
27-57
|
0.988
|
38-63
|
0.976
|
— | — |
0.000
|
— | — |
0.562
|
0.153
|
0.081
|
0.440
|
0.093
|
0.071
|
0.040
|
0.051
|
0.174
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004383
|
2.000
|
1.000
|
Hsc_gene_24253.t1
|
Hsc_gene_24253.t1
|
— |
Q976A0.2 Nucleoside diphosphate kinase [Sulfurisphaera tokodaii str. 7]
|
KAI3415530.1 Nucleoside diphosphate kinase, mitochondrial [Globodera pallida]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004550|GO:0006183|GO:0006228|GO:0006241
|
GO:0005575_0.787|GO:0110165_0.771|GO:0008150_0.757|GO:0003674_0.683|GO:0005622_0.662|GO:0016020_0.592|GO:0009987_0.581|GO:0043226_0.552|GO:0005737_0.546|GO:0043229_0.545|GO:0043227_0.512|GO:0043231_0.505|GO:0003824_0.501
|
IPR001564+73-95_175-194+|IPR034907+70-201_71-199+|IPR036850+70-201_72-201+
|
SM00562+70-201+
|
PF00334+71-199+Nucleoside_diphosphate_kinase
|
— |
PTHR11349+60-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
22759.000
|
10.403
|
13.500
|
24.876
|
10.448
|
47.264
|
52.736
|
16.418
|
8.458
|
50.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
18.288
|
5.065
|
5.796
|
17.121
|
22.779
|
10.595
|
16.029
|
3.470
|
0.000
|
49.687
|
28.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.620
|
1.676
|
— |
-1.091
|
— |
-1.728
|
2.357
|
— |
4.955
|
— | — | — |
No JSON data available for plots.