Hg_chrom6_TN10mRNA_12471
Organism: Heterodera glycines Gene Locus: chr6:6825831-6826423 Feature type: polypeptideProtein Sequence
Length: 104
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 2.013 | 0.524 | 0.663 | 1.603 | 0.493 | 0.687 | 0.481 | 1.923 | 1.429 | 0.583 | 1.697 | 1.068 | 0.37 | 1.177 | 1.099 | 1.419 | 0.146 | 0.74 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11749
|
— | — |
1.889
|
1.000
|
2.000
|
1.000
|
2.000
|
5.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.494
|
0.156
|
0.003
|
0.546
|
0.262
|
0.266
|
0.169
|
0.162
|
0.206
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004421
|
1.000
|
2.000
|
Hsc_gene_24258.t1;Hsc_gene_24258.t2
|
Hsc_gene_24258.t1;Hsc_gene_24258.t2
|
— |
G5ECJ6.1 Tyrosine-protein kinase csk-1 [Caenorhabditis elegans]
|
KAI1731603.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0008150_0.913|GO:0110165_0.898|GO:0009987_0.852|GO:0003674_0.770|GO:0065007_0.723|GO:0050789_0.712|GO:0050794_0.697|GO:0005622_0.685|GO:0005488_0.680|GO:0016020_0.671|GO:0050896_0.614|GO:0051716_0.589|GO:0005515_0.574|GO:0032501_0.574|GO:0008152_0.564|GO:0044237_0.562|GO:0023052_0.561|GO:0007154_0.559|GO:0048519_0.551|GO:0007165_0.548|GO:0048523_0.541|GO:0005737_0.528|GO:0051179_0.505
|
IPR000980+9-45_9-47+|IPR036860+2-82_5-46+
|
— |
PF00017+9-47+SH2_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-104
|
3eaz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
11605.120
|
4.809
|
-2.500
|
23.077
|
8.654
|
50.000
|
50.000
|
10.577
|
12.500
|
48.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
12.934
|
9.487
|
9.307
|
9.575
|
7.962
|
17.025
|
14.083
|
15.126
|
2.764
|
23.552
|
14.643
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.118
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.