Hg_chrom6_TN10mRNA_12472
Organism: Heterodera glycines Gene Locus: chr6:6828682-6829823 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 1.236 | 1.142 | 0.333 | 1.208 | 1.239 | 0.748 | 0.725 | 1.181 | 0.979 | 1.684 | 1.421 | 1.744 | 0.65 | 0.394 | 1.242 | 1.03 | 1.391 | 0.372 | 0.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11750
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
NKVKKVKKKT
|
— | — |
34-74
|
0.976
|
— | — |
0.000
|
— | — |
0.400
|
0.263
|
0.013
|
0.629
|
0.362
|
0.156
|
0.266
|
0.025
|
0.196
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002324
|
3.000
|
1.000
|
Hsc_gene_7237.t1
|
Hsc_gene_7237.t1
|
— |
P19625.1 Myosin regulatory light chain 1 [Caenorhabditis elegans]
|
KAF7634251.1 Myosin regulatory light chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.805|GO:0008150_0.780|GO:0110165_0.778|GO:0005622_0.698|GO:0043226_0.650|GO:0005737_0.635|GO:0043229_0.607
|
IPR002048+76-111_80-106_80-108_145-180_149-177+|IPR011992+73-177+|IPR018247+89-101+|IPR050403+57-178+
|
SM00054+80-108_149-177+
|
PF00036+80-106+EF_hand
|
G3DSA:1.10.238.10:FF:000007+56-142+Putative_myosin_regulatory_light_chain_sqh
|
PTHR23049+57-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
9gz1_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
22936.170
|
6.723
|
0.500
|
28.019
|
8.696
|
53.140
|
46.860
|
14.493
|
13.527
|
51.208
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
208.032
|
29.290
|
48.083
|
30.142
|
44.305
|
52.789
|
58.918
|
417.557
|
4.992
|
650.987
|
374.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.482
|
— |
-0.563
|
0.525
|
— | — |
2.879
|
-2.680
|
— |
2.793
|
— | — | — |
No JSON data available for plots.