Hg_chrom6_TN10mRNA_12474
Organism: Heterodera glycines Gene Locus: chr6:6837567-6838849 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 0.755 | 0.826 | 0.896 | 1.082 | 0.833 | 0.618 | 1.948 | 0.866 | 1.229 | 0.885 | 3.82 | 1.623 | 1.249 | 1.06 | 0.742 | 0.852 | 0.689 | 2.498 | 1.146 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11752
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
35-72
|
0.915
|
— | — |
0.000
|
— | — |
0.290
|
0.300
|
0.018
|
0.500
|
0.178
|
0.235
|
0.300
|
0.117
|
0.201
|
0.590
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004422
|
2.000
|
1.000
|
Hsc_gene_6176.t1
|
Hsc_gene_6176.t1
|
— |
A6QNR0.2 Hexosaminidase D [Bos taurus]
|
KAF7639582.1 Glyco_hydro_20 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015929
|
GO:0005575_0.866|GO:0003674_0.863|GO:0110165_0.858|GO:0016020_0.786|GO:0043226_0.746|GO:0003824_0.744|GO:0043227_0.723|GO:0016787_0.685|GO:0016798_0.658|GO:0004553_0.657|GO:0004563_0.650|GO:0015929_0.650|GO:0005622_0.525
|
IPR017853+16-124+|IPR038901+8-150+
|
— | — | — |
PTHR21040+8-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
152-154
|
1.000
|
1-151
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
18040.940
|
7.372
|
3.000
|
25.974
|
16.883
|
42.857
|
57.143
|
14.935
|
11.039
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
438.986
|
7.861
|
6.287
|
7.255
|
9.063
|
10.894
|
53.362
|
31.989
|
10.645
|
1865.063
|
1070.313
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.304
|
1.448
|
0.883
|
-7.594
|
— |
-7.522
|
— | — |
No JSON data available for plots.