Hg_chrom6_TN10mRNA_12480
Organism: Heterodera glycines Gene Locus: chr6:6861811-6864380 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.401 | 0.7 | 1.369 | 0.623 | 0.954 | 1.158 | 0.717 | 1.054 | 1.205 | 0.773 | 0.867 | 0.709 | 1.171 | 0.811 | 1.414 | 1.076 | 1.037 | 1.095 | 0.695 | 0.532 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11758
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.248
|
0.028
|
0.429
|
0.338
|
0.547
|
0.633
|
0.045
|
0.359
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010754
|
1.000
|
1.000
|
Hsc_gene_6191.t1
|
Hsc_gene_6191.t1
|
— |
Q20365.1 Ras-related protein Rab-33 [Caenorhabditis elegans]
|
KAI1731714.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0032482
|
GO:0005575_0.919|GO:0110165_0.912|GO:0008150_0.791|GO:0005622_0.782|GO:0016020_0.731|GO:0043226_0.679|GO:0071944_0.671|GO:0005737_0.670|GO:0043229_0.663|GO:0009987_0.654|GO:0005886_0.640|GO:0043227_0.593|GO:0043231_0.562
|
IPR001806+102-313_108-288_109-290+|IPR005225+107-271+|IPR027417+101-326_103-302+|IPR041822+105-289+
|
SM00173+104-290+|SM00174+109-290+|SM00175+107-290+|SM00176+112-329+
|
PF00071+108-288+Ras_family
|
G3DSA:3.40.50.300:FF:002841+104-325+Ras-related_protein_Rab-33
|
PTHR47978+102-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;328-332
|
1.000
|
43-327
|
6zay_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
36350.870
|
6.827
|
1.500
|
28.012
|
9.036
|
49.398
|
50.602
|
14.759
|
13.253
|
55.723
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
471.879
|
732.401
|
497.476
|
621.070
|
683.561
|
646.604
|
490.933
|
380.980
|
410.665
|
236.589
|
311.193
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.788
|
-0.375
|
0.429
|
— | — |
-0.387
|
-0.867
|
0.508
|
— | — | — | — | — |
No JSON data available for plots.