Hg_chrom6_TN10mRNA_12481
Organism: Heterodera glycines Gene Locus: chr6:6864749-6869007 Feature type: polypeptideProtein Sequence
Length: 589
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.244 | 0.75 | 0.864 | 0.82 | 0.538 | 1.828 | 0.95 | 1.868 | 0.604 | 0.826 | 0.489 | 1.698 | 1.085 | 1.404 | 1.386 | 1.48 | 0.946 | 0.849 | 0.914 | 0.3 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11759
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
SMMRGGRHERGKKRARKLL
|
— | — |
5-61
|
0.997
|
1-25
|
0.991
|
1.000
|
1.000
|
1.000
|
0.193
|
0.043
|
0.027
|
0.229
|
0.152
|
0.335
|
0.192
|
0.058
|
0.821
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004423
|
1.000
|
2.000
|
Hsc_gene_6192.t1;Hsc_gene_6192.t2
|
Hsc_gene_6192.t1;Hsc_gene_6192.t2
|
— | — |
KAH7731913.1 Protein R10E12.2 [Aphelenchus avenae]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR040426+198-300+
|
— | — | — |
PTHR38626+198-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-199;296-405;479-589
|
3.000
|
1-150;200-295;406-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
63525.320
|
8.963
|
23.000
|
21.732
|
9.847
|
48.217
|
51.783
|
13.752
|
7.980
|
58.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
423.241
|
1819.038
|
815.056
|
469.761
|
243.163
|
240.093
|
222.000
|
306.889
|
251.874
|
119.272
|
176.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.387
|
-2.090
|
-0.687
|
-0.982
|
— | — | — | — | — | — | — | — | — |