Hg_chrom6_TN10mRNA_12483
Organism: Heterodera glycines Gene Locus: chr6:6880819-6881484 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 0.953 | 1.49 | 0.565 | 1.776 | 0.841 | 0.39 | 1.639 | 1.457 | 1.218 | 0.745 | 1.929 | 0.683 | 0.788 | 1.506 | 0.585 | 0.403 | 0.373 | 2.522 | 2.17 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11761
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.281
|
0.008
|
0.479
|
0.072
|
0.056
|
0.023
|
0.011
|
0.177
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010756
|
2.000
|
0.000
|
0.000
|
— | — | — |
CAD2189987.1 unnamed protein product [Meloidogyne enterolobii];CAK5072432.1 unnamed protein product [Meloidogyne enterolobii];CAK5072498.1 unnamed protein product [Meloidogyne enterolobii];CAK5091323.1 unnamed protein product [Meloidogyne enterolobii];CAK5095719.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.833|GO:0110165_0.817|GO:0008150_0.774|GO:0005622_0.747|GO:0009987_0.717|GO:0043226_0.674|GO:0043229_0.655|GO:0065007_0.622|GO:0050789_0.610|GO:0016020_0.601|GO:0050794_0.597|GO:0003674_0.563|GO:0005737_0.550|GO:0043227_0.506
|
IPR011009+2-112+|IPR050235+1-117+
|
— | — | — |
PTHR11909+1-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-122
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
14650.470
|
4.698
|
-6.000
|
34.426
|
16.393
|
48.361
|
51.639
|
15.574
|
18.852
|
38.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
634.831
|
3.809
|
6.934
|
21.798
|
74.573
|
1511.815
|
67.571
|
2933.394
|
0.000
|
1044.926
|
597.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.379
|
1.766
|
1.745
|
4.355
|
-4.471
|
0.842
|
-5.290
|
-10.840
|
5.303
|
— | — | — |
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