Hg_chrom6_TN10mRNA_12485
Organism: Heterodera glycines Gene Locus: chr6:6883241-6884952 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.078 | 0.963 | 0.799 | 0.938 | 1.104 | 0.828 | 1.49 | 0.883 | 1.298 | 0.953 | 1.558 | 1.472 | 0.828 | 1.014 | 1.135 | 0.597 | 1.405 | 1.528 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11763
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.499
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.271
|
0.019
|
0.559
|
0.210
|
0.204
|
0.197
|
0.092
|
0.068
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010758
|
1.000
|
1.000
|
Hsc_gene_6186.t1
|
Hsc_gene_6186.t1
|
— |
Q9BIB3.1 Probable protein phosphatase methylesterase 1 [Caenorhabditis elegans]
|
KAI6215019.1 Protein phosphatase methylesterase 1 [Aphelenchoides besseyi];KAI6235506.1 Protein phosphatase methylesterase 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006482|GO:0051723
|
GO:0003674_0.761|GO:0008150_0.680|GO:0005575_0.625|GO:0110165_0.625|GO:0005488_0.565|GO:0005622_0.563|GO:0016020_0.562|GO:0043226_0.517
|
IPR000073+39-285_63-78_114-127+|IPR016812+1-301_2-296+|IPR029058+2-298_19-286+
|
— |
PF12697+39-285+Alpha/beta_hydrolase_family
|
— |
PTHR14189+2-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
34002.020
|
7.680
|
5.500
|
25.166
|
12.583
|
45.695
|
54.305
|
14.238
|
10.927
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1385.903
|
2221.347
|
1666.733
|
1239.099
|
1287.975
|
1161.231
|
1374.756
|
1650.751
|
1263.938
|
1139.661
|
1192.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.644
|
-0.979
|
-0.319
|
— | — |
0.255
|
0.401
|
— | — | — | — | — | — |
No JSON data available for plots.