SCN Proteipedia

Hg_chrom6_TN10mRNA_12486

Organism: Heterodera glycines Gene Locus: chr6:6885686-6890355 Feature type: polypeptide

Protein Sequence

Length: 291

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.959	0.879	1.375	0.237	1.775	1.41	0.532	1.203	1.833	1.068	1.302	2.224	0.955	0.264	1.192	0.785	0.676	0.989	0.0	0.404	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11764	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.513

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KKAVQYQSKARRKKII	—	—	—	—	—	—	0.000	—	—	0.119	0.054	0.001	0.235	0.369	0.644	0.624	0.029	0.712	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004424	2.000	1.000	Hsc_gene_6185.t2	Hsc_gene_6185.t1;Hsc_gene_6185.t2	—	O16000.1 Syntaxin-1A homolog [Caenorhabditis elegans]	KAF7639147.1 t-SNARE coiled-coil homology domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005484\|GO:0006886\|GO:0016020\|GO:0016192	GO:0005575_0.933\|GO:0110165_0.933\|GO:0008150_0.890\|GO:0016020_0.879\|GO:0009987_0.842\|GO:0005886_0.812\|GO:0071944_0.812\|GO:0051179_0.706\|GO:0005622_0.697\|GO:0006810_0.668\|GO:0051234_0.668\|GO:0071840_0.664\|GO:0016043_0.652\|GO:0003674_0.637\|GO:0065007_0.619\|GO:0005737_0.601\|GO:0050789_0.601\|GO:0043226_0.583\|GO:0051641_0.578\|GO:0005488_0.577\|GO:0005515_0.577\|GO:0043229_0.549\|GO:0061024_0.549\|GO:0030054_0.532\|GO:0043227_0.530\|GO:0006996_0.511\|GO:0043231_0.510\|GO:0098590_0.510\|GO:0050794_0.504	IPR000727+188-255_193-255_229-280+\|IPR006011+26-147_31-182_33-228+\|IPR006012+199-238+\|IPR010989+30-248+\|IPR045242+33-275+	SM00397+188-255+\|SM00503+26-147+	PF00804+33-228+Syntaxin\|PF05739+229-280+SNARE_domain	G3DSA:1.20.5.110:FF:000005+181-289+Syntaxin_1B\|G3DSA:1.20.58.70:FF:000042+27-224+Syntaxin_11b,_tandem_duplicate_2	PTHR19957+33-275+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-126	1.000	127-291	9pd8_H	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.800	33095.730	5.088	-7.500	35.052	7.216	53.952	46.048	16.838	18.213	42.268

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2440.936	3619.719	1558.907	1092.477	906.206	1460.221	2560.142	1790.667	2257.130	4115.619	3319.124

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.444	-1.865	-0.405	-0.301	0.702	0.821	—	0.657	—	—	—	—	—

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