Hg_chrom6_TN10mRNA_12488
Organism: Heterodera glycines Gene Locus: chr6:6893221-6895715 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 0.519 | 0.811 | 0.385 | 0.929 | 1.239 | 0.885 | 2.602 | 1.239 | 1.356 | 0.789 | 0.875 | 1.859 | 1.001 | 1.669 | 1.381 | 0.305 | 0.451 | 1.43 | 0.547 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11765
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
KKKRRKS
|
4-24
|
0.995
|
— | — | — |
0.748
|
0.112
|
0.000
|
— |
0.414
|
0.419
|
0.010
|
0.086
|
0.077
|
0.081
|
0.087
|
0.015
|
0.055
|
0.730
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010759
|
1.000
|
1.000
|
Hsc_gene_6184.t1
|
Hsc_gene_6183.t1;Hsc_gene_6184.t1
|
— |
P51511.1 Matrix metalloproteinase-15 [Homo sapiens]
|
KAF7639134.1 ZnMc domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.821|GO:0005575_0.664|GO:0110165_0.664|GO:0009987_0.660|GO:0003674_0.659|GO:0008152_0.547|GO:0016020_0.525
|
IPR001818+116-257+|IPR006026+47-258+|IPR021190+120-148_203-228_244-257+|IPR024079+23-262+
|
SM00235+47-258+
|
PF00413+116-257+Matrixin
|
— |
PTHR10201+42-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-269
|
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
30517.780
|
10.121
|
16.000
|
28.625
|
15.613
|
47.212
|
52.788
|
18.587
|
10.037
|
43.494
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
342.661
|
258.178
|
142.528
|
65.911
|
93.809
|
132.418
|
50.285
|
62.953
|
140.240
|
1091.683
|
683.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
-2.107
|
-1.004
|
0.477
|
0.513
|
-1.386
|
-1.184
|
— | — | — | — | — | — |