Hg_chrom6_TN10mRNA_12492
Organism: Heterodera glycines Gene Locus: chr6:6900108-6905162 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.094 | 0.741 | 0.757 | 1.254 | 0.965 | 1.12 | 1.489 | 1.498 | 1.356 | 0.879 | 1.291 | 1.132 | 0.723 | 1.088 | 0.851 | 0.642 | 1.14 | 0.241 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKLYKNKLSVDERHRHR,KRTTVFLAENSLIRKLYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.398
|
0.052
|
0.590
|
0.218
|
0.176
|
0.211
|
0.102
|
0.140
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010762
|
1.000
|
1.000
|
Hsc_gene_6180.t1
|
Hsc_gene_6180.t1
|
— |
P17812.2 CTP synthase 1 [Homo sapiens]
|
KAI1731705.1 glutamine amidotransferase class-I domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003883|GO:0006221|GO:0006241
|
GO:0005575_0.844|GO:0110165_0.836|GO:0008150_0.703|GO:0005622_0.688|GO:0005737_0.630|GO:0003674_0.581|GO:0009987_0.581
|
IPR004468+6-480_7-603+|IPR017456+7-255+|IPR017926+300-480+|IPR027417+1-116_7-255_117-264+|IPR029062+279-500_281-487_504-605_551-594+|IPR033828+283-588+
|
— |
PF00117+300-480+Glutamine_amidotransferase_class-I|PF06418+7-255+CTP_synthase_N-terminus
|
— |
PTHR11550+7-603+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
636-638
|
1.000
|
1-635
|
3ihl_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
70273.740
|
7.104
|
6.500
|
25.705
|
10.031
|
44.044
|
55.956
|
14.107
|
11.599
|
48.589
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
2043.013
|
2874.066
|
2138.797
|
3143.705
|
3297.961
|
2564.930
|
3682.372
|
1665.632
|
1019.930
|
910.434
|
957.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.656
|
— |
0.664
|
— |
-0.348
|
0.533
|
-0.727
|
1.288
|
— |
1.800
|
2.042
|
— | — |
No JSON data available for plots.