Hg_chrom6_TN10mRNA_12496
Organism: Heterodera glycines Gene Locus: chr6:6915900-6917179 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.556 | 0.769 | 1.003 | 0.507 | 1.042 | 1.32 | 0.613 | 1.103 | 1.307 | 1.192 | 1.281 | 1.298 | 2.553 | 0.778 | 0.75 | 0.998 | 1.085 | 1.337 | 0.283 | 0.324 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11772
|
Hg_chrom6_TN10gene_11772
|
— |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
NKVKKVKKKT
|
— | — |
34-74
|
0.976
|
— | — |
0.000
|
— | — |
0.441
|
0.262
|
0.012
|
0.564
|
0.342
|
0.173
|
0.285
|
0.012
|
0.222
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002324
|
3.000
|
1.000
|
Hsc_gene_7237.t1
|
Hsc_gene_7237.t1
|
— |
P19625.1 Myosin regulatory light chain 1 [Caenorhabditis elegans]
|
KAF7634251.1 Myosin regulatory light chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.812|GO:0008150_0.791|GO:0110165_0.790|GO:0005622_0.681|GO:0043226_0.651|GO:0005737_0.624|GO:0043229_0.595
|
IPR002048+76-111_80-108_147-182_151-179+|IPR011992+73-179+|IPR018247+89-101+|IPR050403+57-180+
|
SM00054+80-108_151-179+
|
PF13405+80-108+EF-hand_domain
|
G3DSA:1.10.238.10:FF:000007+56-142+Putative_myosin_regulatory_light_chain_sqh
|
PTHR23049+57-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
9gz1_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
30818.640
|
7.769
|
4.000
|
26.103
|
12.868
|
48.162
|
51.838
|
14.338
|
11.765
|
46.691
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.016
|
0.386
|
0.650
|
1.133
|
2.138
|
2.391
|
1.218
|
0.553
|
0.000
|
5.642
|
3.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.