Hg_chrom6_TN10mRNA_12498
Organism: Heterodera glycines Gene Locus: chr6:6926963-6928086 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.104 | 1.233 | 0.701 | 1.638 | 0.695 | 0.202 | 0.339 | 1.507 | 1.42 | 0.924 | 1.795 | 1.13 | 0.717 | 1.522 | 1.598 | 0.778 | 0.822 | 0.782 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11775
|
— | — |
1.556
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.798
|
0.177
|
0.046
|
0.238
|
0.091
|
0.176
|
0.102
|
0.114
|
0.026
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000422
|
6.000
|
2.000
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1
|
Hsc_gene_18013.t1
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.914|GO:0110165_0.906|GO:0005622_0.883|GO:0043226_0.833|GO:0016020_0.825|GO:0043229_0.808|GO:0005737_0.795|GO:0043227_0.787|GO:0043231_0.765|GO:0005634_0.672|GO:0003674_0.602|GO:0031974_0.581|GO:0031981_0.581|GO:0043233_0.581|GO:0070013_0.581|GO:0005488_0.577|GO:0005654_0.566|GO:0005515_0.564
|
IPR008906+211-286+|IPR012337+18-289+|IPR052035+2-295+
|
— |
PF05699+211-286+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+2-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
33944.660
|
4.805
|
-8.000
|
30.847
|
7.797
|
54.237
|
45.763
|
14.237
|
16.610
|
45.763
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
57.992
|
0.940
|
1.900
|
2.260
|
0.830
|
3.487
|
0.202
|
1.934
|
19.265
|
234.936
|
142.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.088
|
-4.086
|
— | — | — | — |
-6.663
|
— |
-7.734
|
No JSON data available for plots.