Hg_chrom6_TN10mRNA_12500
Organism: Heterodera glycines Gene Locus: chr6:6928334-6933551 Feature type: polypeptideProtein Sequence
Length: 601
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.735 | 0.696 | 0.574 | 1.276 | 1.28 | 0.673 | 1.498 | 1.257 | 1.506 | 0.756 | 2.055 | 2.034 | 0.928 | 1.188 | 0.761 | 0.627 | 0.983 | 1.408 | 0.93 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11776
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRIYELINECFYELRQFRK
|
3-28
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.258
|
0.040
|
0.001
|
0.179
|
0.456
|
0.137
|
0.856
|
0.015
|
0.134
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004422
|
2.000
|
1.000
|
Hsc_gene_6176.t1
|
Hsc_gene_6176.t1
|
— |
A6QNR0.2 Hexosaminidase D [Bos taurus]
|
KAF7639582.1 Glyco_hydro_20 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975|GO:0015929
|
GO:0005575_0.901|GO:0110165_0.892|GO:0003674_0.874|GO:0016020_0.848|GO:0003824_0.763|GO:0043226_0.748|GO:0043227_0.727|GO:0016787_0.691|GO:0016798_0.656|GO:0004553_0.655|GO:0004563_0.650|GO:0015929_0.650|GO:0005622_0.520|GO:0005737_0.505
|
IPR015883+211-355+|IPR017853+162-469+|IPR038901+124-600+
|
— |
PF00728+211-355+Glycosyl_hydrolase_family_20,_catalytic_domain
|
— |
PTHR21040+124-600+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-601
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
69600.730
|
6.981
|
5.000
|
25.291
|
15.308
|
42.596
|
57.404
|
13.810
|
11.481
|
40.932
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
1773.171
|
760.339
|
638.500
|
487.970
|
422.901
|
945.596
|
867.598
|
592.546
|
1481.634
|
4878.103
|
3422.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
-0.777
|
-0.279
|
-0.237
|
1.175
|
— |
-0.779
|
0.692
|
-1.837
|
-1.444
|
-3.269
|
— | — |
No JSON data available for plots.