Hg_chrom6_TN10mRNA_12501
Organism: Heterodera glycines Gene Locus: chr6:6933782-6935772 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.091 | 1.013 | 0.303 | 1.271 | 1.203 | 0.628 | 1.76 | 1.303 | 1.268 | 1.289 | 1.553 | 1.222 | 1.015 | 1.736 | 0.67 | 0.625 | 0.578 | 1.353 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11777
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKYQGIFYGLRRIRKKDG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.929
|
0.019
|
0.091
|
0.040
|
0.013
|
0.026
|
0.032
|
0.069
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010765
|
1.000
|
1.000
|
Hsc_gene_6175.t1
|
Hsc_gene_6175.t1
|
— |
Q616T6.1 Large ribosomal subunit protein mL45 [Caenorhabditis briggsae]
|
KAI1695071.1 tim44-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.894|GO:0005622_0.885|GO:0043226_0.839|GO:0016020_0.825|GO:0043229_0.824|GO:0043227_0.787|GO:0005737_0.775|GO:0043231_0.762|GO:0008150_0.604|GO:0005739_0.569|GO:0009987_0.550|GO:0003674_0.539
|
IPR007379+145-293_146-289+|IPR032710+141-297+|IPR051975+68-305+
|
SM00978+145-293+
|
PF04280+146-289+Tim44-like_domain
|
— |
PTHR28554+68-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;304-341
|
1.000
|
3-303
|
7qh7_d
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
40016.890
|
10.012
|
19.000
|
33.724
|
12.903
|
51.613
|
48.387
|
20.528
|
13.196
|
39.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1625.075
|
744.805
|
873.724
|
1095.932
|
1385.144
|
1097.572
|
2001.081
|
858.939
|
3623.018
|
1370.993
|
2336.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.420
|
0.436
|
0.306
|
-0.321
|
0.878
|
-0.459
|
1.364
|
— | — | — | — | — |
No JSON data available for plots.