Hg_chrom6_TN10mRNA_12502
Organism: Heterodera glycines Gene Locus: chr6:6936359-6938141 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.044 | 1.415 | 0.103 | 2.046 | 1.228 | 0.642 | 0.749 | 1.331 | 1.011 | 1.27 | 1.409 | 1.414 | 0.979 | 0.489 | 0.813 | 0.982 | 0.862 | 0.461 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.667
|
0.116
|
0.005
|
0.671
|
0.135
|
0.087
|
0.104
|
0.015
|
0.084
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010766
|
1.000
|
1.000
|
Hsc_gene_6174.t1
|
Hsc_gene_6174.t1
|
— |
Q78ZA7.1 Nucleosome assembly protein 1-like 4 [Mus musculus]
|
KAI1716609.1 nucleosome assembly protein (NAP) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006334
|
GO:0008150_0.849|GO:0005575_0.751|GO:0110165_0.750|GO:0009987_0.748|GO:0003674_0.668|GO:0005622_0.656|GO:0005488_0.615|GO:0016020_0.600|GO:0005737_0.579|GO:0043226_0.573|GO:0005515_0.563|GO:0043229_0.548
|
IPR002164+36-329_42-305+|IPR037231+28-311+
|
— |
PF00956+42-305+Nucleosome_assembly_protein_(NAP)
|
— |
PTHR11875+36-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;302-334
|
1.000
|
22-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
38113.540
|
4.227
|
-28.500
|
32.335
|
10.778
|
53.293
|
46.707
|
12.275
|
20.060
|
45.509
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
6654.155
|
4049.716
|
3193.166
|
8521.110
|
9402.735
|
6365.100
|
5484.021
|
3720.878
|
5933.570
|
9385.480
|
7906.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.573
|
0.936
|
1.525
|
0.110
|
-0.548
|
-0.204
|
-0.878
|
0.702
|
— | — | — | — | — |
No JSON data available for plots.