Hg_chrom6_TN10mRNA_12503
Organism: Heterodera glycines Gene Locus: chr6:6938630-6946597 Feature type: polypeptideProtein Sequence
Length: 1,626
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.958 | 0.629 | 0.962 | 1.145 | 0.964 | 0.978 | 1.025 | 1.722 | 0.793 | 1.222 | 0.429 | 0.796 | 1.23 | 1.147 | 1.531 | 1.502 | 0.958 | 0.829 | 1.041 | 0.271 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11779
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRSR,KRRRR,RRKRR,RRRRSLLSRKIRRRVQ
|
47-121
|
0.989
|
22-55
|
0.999
|
— | — |
0.000
|
— | — |
0.256
|
0.085
|
0.011
|
0.269
|
0.211
|
0.272
|
0.355
|
0.047
|
0.618
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010767
|
1.000
|
1.000
|
Hsc_gene_6173.t1
|
Hsc_gene_6172.t1;Hsc_gene_6173.t1
|
— |
Q9VYN8.2 Teneurin-a [Drosophila melanogaster]
|
KHN77069.1 Teneurin-3 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.850|GO:0005575_0.790|GO:0110165_0.790|GO:0009987_0.753|GO:0071944_0.649|GO:0016020_0.644|GO:0032501_0.621|GO:0032502_0.607|GO:0048856_0.607|GO:0005886_0.606|GO:0003674_0.601|GO:0065007_0.596|GO:0007275_0.583|GO:0050789_0.570|GO:0048731_0.565|GO:0005488_0.527|GO:0050794_0.511
|
IPR000742+337-365_353-364_368-396_398-432_401-432_420-431_435-465_505-534_534-569_537-569_557-568+|IPR002049+406-438+|IPR011042+993-1234+|IPR013111+402-431+|IPR051216+1115-1369+
|
SM00181+337-365_368-396_401-432_435-465_505-534_537-569+
|
PF07974+402-431+EGF-like_domain
|
G3DSA:2.10.25.10:FF:000013+368-398+Teneurin_transmembrane_protein_4
|
PTHR11219+1115-1369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83;1369-1497
|
2.000
|
84-1368;1498-1626
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
176692.710
|
6.990
|
16.000
|
24.846
|
10.148
|
47.724
|
52.276
|
13.776
|
11.070
|
55.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1380.977
|
2222.593
|
968.245
|
1059.701
|
1572.840
|
1501.822
|
1645.741
|
1233.565
|
361.051
|
1944.295
|
1265.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.428
|
-1.206
|
0.239
|
0.538
|
— | — |
-0.386
|
0.557
|
-2.543
|
— | — | — | — |
No JSON data available for plots.