SCN Proteipedia

Hg_chrom6_TN10mRNA_12504

Organism: Heterodera glycines Gene Locus: chr6:6953425-6958481 Feature type: polypeptide

Protein Sequence

Length: 904

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.823	1.286	0.784	0.648	1.825	2.184	0.342	1.604	1.008	1.33	1.24	1.236	0.676	0.468	1.513	0.996	0.671	0.704	0.425	0.716	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11780	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.626

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RKQRESEEEMQKSRKGKQ	—	—	—	—	—	—	0.000	—	—	0.414	0.237	0.008	0.737	0.067	0.183	0.168	0.088	0.375	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010768	1.000	1.000	Hsc_gene_6171.t1	Hsc_gene_6171.t1	—	Q6DD27.1 Serine/threonine-protein kinase TAO3 [Xenopus laevis]	KAF7639109.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.981\|GO:0009987_0.942\|GO:0065007_0.858\|GO:0050789_0.854\|GO:0050794_0.842\|GO:0005575_0.793\|GO:0110165_0.792\|GO:0005622_0.773\|GO:0003674_0.743\|GO:0050896_0.712\|GO:0016043_0.691\|GO:0071840_0.691\|GO:0051716_0.666\|GO:0007154_0.657\|GO:0003824_0.653\|GO:0016740_0.653\|GO:0016772_0.653\|GO:0023052_0.651\|GO:0140096_0.641\|GO:0032502_0.637\|GO:0007165_0.636\|GO:0048856_0.636\|GO:0016301_0.629\|GO:0004672_0.620\|GO:0016773_0.620\|GO:0016020_0.602\|GO:0005488_0.601\|GO:0032501_0.579\|GO:0048518_0.579\|GO:0035556_0.571\|GO:0048522_0.568\|GO:0043226_0.545\|GO:0005515_0.541\|GO:0005737_0.529\|GO:0008152_0.524\|GO:0043170_0.524\|GO:0007275_0.520\|GO:0004674_0.514\|GO:0030154_0.508\|GO:0048731_0.508\|GO:0048869_0.508\|GO:0048468_0.506\|GO:0019538_0.504\|GO:0044238_0.504\|GO:0044237_0.503	IPR000719+30-289+\|IPR011009+28-290+\|IPR017441+36-60+\|IPR051234+7-883+	SM00220+30-289+	PF00069+30-289+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000877+110-328+TAO_kinase_2	PTHR47167+7-883+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;333-432;584-725;857-904	3.000	6-332;433-583;726-856	1u5r_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.560	105061.610	7.876	17.500	34.071	8.628	59.181	40.819	18.805	15.265	39.823

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	1408.312	1685.502	1145.095	1361.606	1521.216	1198.887	1948.454	1024.658	1372.858	1424.688	1402.475

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.787	-0.445	0.359	0.129	-0.329	0.712	-0.331	1.070	—	—	—	—	—

No JSON data available for plots.

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