Hg_chrom6_TN10mRNA_12505
Organism: Heterodera glycines Gene Locus: chr6:6958678-6960868 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.36 | 0.412 | 1.126 | 0.458 | 1.401 | 1.021 | 0.737 | 1.327 | 0.787 | 1.136 | 1.14 | 2.082 | 1.721 | 1.191 | 1.535 | 0.885 | 0.725 | 0.939 | 3.063 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKWAEKCGGSEAAVHHKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.506
|
0.553
|
0.018
|
0.357
|
0.070
|
0.072
|
0.042
|
0.032
|
0.114
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010769
|
1.000
|
1.000
|
Hsc_gene_6170.t1
|
Hsc_gene_24256.t1;Hsc_gene_24256.t2;Hsc_gene_6170.t1
|
— | — |
KAI1731703.1 mitochondrial 28S ribosomal protein s34 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005739
|
GO:0008150_0.927|GO:0005575_0.894|GO:0110165_0.888|GO:0009987_0.871|GO:0005622_0.851|GO:0016020_0.814|GO:0043226_0.806|GO:0008152_0.805|GO:0005737_0.799|GO:0044238_0.794|GO:0043229_0.788|GO:0044237_0.780|GO:0043170_0.779|GO:0009058_0.771|GO:0043227_0.769|GO:0044249_0.758|GO:0009059_0.749|GO:0043231_0.749|GO:0019538_0.738|GO:0010467_0.735|GO:0006412_0.683|GO:0006414_0.683|GO:0005739_0.670|GO:0032543_0.670|GO:0140053_0.670|GO:0003674_0.541
|
IPR032053+11-174_15-139+
|
— |
PF16053+15-139+Mitochondrial_28S_ribosomal_protein_S34
|
— |
PTHR28589+11-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
26752.660
|
7.836
|
4.000
|
32.301
|
15.487
|
48.673
|
51.327
|
17.699
|
14.602
|
41.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
492.245
|
471.098
|
413.628
|
629.760
|
693.319
|
498.781
|
751.424
|
340.017
|
70.690
|
676.296
|
416.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.418
|
0.282
|
0.715
|
— |
-0.460
|
0.602
|
-0.657
|
1.287
|
— | — | — | — | — |
No JSON data available for plots.