Hg_chrom6_TN10mRNA_12506
Organism: Heterodera glycines Gene Locus: chr6:6961055-6973474 Feature type: polypeptideProtein Sequence
Length: 2,638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.987 | 0.972 | 0.993 | 1.005 | 1.769 | 0.853 | 1.213 | 0.885 | 0.973 | 0.758 | 1.717 | 0.853 | 1.072 | 1.261 | 1.208 | 1.044 | 0.873 | 0.554 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11782
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,KKKKR,PMCKRRV,TRGRKRKKP,RRTESTRGGRGKGRKP,RKNRANCPTTRRRGRRT,KKSRGNASKGKGGNRGRRP,KKALQVQQRLVDKQRQRLK
|
22-50
|
0.982
|
4-54
|
1.000
|
— | — |
0.000
|
— | — |
0.949
|
0.054
|
0.055
|
0.262
|
0.041
|
0.011
|
0.014
|
0.008
|
0.047
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004426
|
2.000
|
1.000
|
Hsc_gene_6169.t1
|
Hsc_gene_24247.t1;Hsc_gene_24255.t1;Hsc_gene_6168.t1;Hsc_gene_6169.t1
|
— |
Q8NEZ4.3 Histone-lysine N-methyltransferase 2C [Homo sapiens]
|
KAI1731709.1 PHD-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634
|
GO:0008150_0.918|GO:0005575_0.877|GO:0110165_0.874|GO:0009987_0.863|GO:0005622_0.804|GO:0003674_0.764|GO:0016020_0.746|GO:0043226_0.730|GO:0043229_0.711|GO:0071840_0.699|GO:0016043_0.697|GO:0065007_0.693|GO:0050789_0.678|GO:0043227_0.655|GO:0050794_0.643|GO:0005634_0.636|GO:0043231_0.636|GO:0032502_0.589|GO:0003824_0.578|GO:0048856_0.559|GO:0005488_0.551|GO:0032501_0.551|GO:0008152_0.533|GO:0043170_0.533|GO:0140096_0.533|GO:0019222_0.532|GO:0031323_0.532|GO:0044237_0.532|GO:0060255_0.527|GO:0048518_0.518|GO:0031974_0.514|GO:0031981_0.514|GO:0043233_0.514|GO:0070013_0.514|GO:0048522_0.513|GO:0006325_0.512|GO:0006338_0.512|GO:0016740_0.511|GO:0009058_0.509|GO:0009059_0.509|GO:0010467_0.509|GO:0044249_0.509|GO:0007275_0.506|GO:0009889_0.502|GO:0031326_0.502
|
IPR001214+2498-2614_2498-2620_2509-2614+|IPR001965+66-114_415-466_467-513_543-594_2132-2181+|IPR003616+2622-2638+|IPR003888+2218-2278_2219-2278_2234-2277+|IPR003889+2279-2376_2283-2382_2310-2377+|IPR011011+407-467_458-520_537-596+|IPR013083+411-465_466-516_540-597_2066-2182+|IPR019787+413-468_465-515_468-512_532-596+|IPR034732+2070-2181+|IPR036910+957-1042+|IPR046341+2482-2638_2485-2638+
|
SM00249+66-114_415-466_467-513_543-594_2132-2181+|SM00317+2498-2620+|SM00508+2622-2638+|SM00541+2234-2277+|SM00542+2283-2382+
|
PF00628+468-512+PHD-finger|PF00856+2509-2614+SET_domain|PF05964+2219-2278+F/Y-rich_N-terminus|PF05965+2310-2377+F/Y_rich_C-terminus
|
G3DSA:3.30.40.10:FF:000002+2067-2183+Histone-lysine_N-methyltransferase
|
PTHR45888+1840-2638+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-393;707-762;844-1678;1765-1873
|
5.000
|
1-191;394-706;763-843;1679-1764;1874-2638
|
6kiw_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
290285.020
|
7.261
|
27.000
|
24.981
|
8.112
|
50.948
|
49.052
|
13.609
|
11.372
|
53.677
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1806.118
|
3737.188
|
1676.396
|
1630.567
|
1722.134
|
1644.251
|
2147.160
|
1255.735
|
2362.612
|
949.770
|
1555.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.387
|
-1.334
|
— | — | — |
0.395
|
-0.495
|
0.917
|
— | — | — | — | — |
No JSON data available for plots.